CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGGTTACTTTCAGCAAGTCCAGTATGCGATGGTGAGAATAAAAG
CCGCCATGCCAAGAATCTACGAGCTCGCTGCTGGAGGCACTGCTGTGGGG
ACGGGGTTAAACACCAGGATCGGCTTCGCAGAAAAGGTGGCCGCAAAAGT
AGCAGCACTCACAGGTTGGGGACCACACGCATTGCTACTCACGTTCTTCA
CATAGCTTATGCATCTTGTAGATATTTCTAGGCTGAATTCTTCTGAAATT
GAGGAGTAACATGTTCCCATCAAACATGGCTTGTGTCCATGTCAGAAGTT
AAAAACGTTTATCTTACTTTTAAAGGCTTCCATATAAGATTCATAGGCAT
GCGTTTACATGTTTTGTTTGCTGTCTGGTAGCATTCAGTCCTTTCTCTTC
AAAGCTATGTTAAGTATTTTTCGAAGAAAGCAGAAACAGTTGACCATTGA
GAAACTTATCACATGATAAGTGCACTGATGTTCTTTGCCGTAACTTCTTT
AAATACCATCCCCACACTAGTACAGTATTGTTATTGTTATTAGAACCAGC
TTGTCATGTCCAGAAAACTGATTAAGATGCTGATGCTACCATAAGGTTAG
GGTAGTAATAAGTATAGAATACATATCACAAGTATATTCAGNTTTTAAAA
TTTGTATATATATATATGTATACAATGTATTGGATTTTCAGCCCTCATCC
AATCCCCAAAAATGTN

GGTGGTTTCACACATATTAGAGAAGAGGAGAAGTCAAGGANGAGTCAAAG
GGGAAGTAGGGGGGTGATGCATGAGGGGGGGTTGTGGATAGATTATATGT
GGAGGTGTGTGGGTGTTGGTGGTAATTGTTTGTTTGGTGTAATTGTGGTG
TTTGGGGGGTTTGAGGGTTTTTTTATGATTGAGTGGTGTTTTTTGCTTGC
ATTTGGGAGGAATTGTGTATGATAAAAAAGTTGGGGGGAGATGGGGTAGT
TAGATGAGTGAGAGGTATTGATTGGGTTGGGAAGGGTATAGAGGTGGTTA
TTTGATGAATATTGAAAAAGGTTAGTTGGGTTAGGGTGGTTGTTTTGTTG
TGATAAATTTTAATGTAAGGAAATTGGGTAAATTTTGGTAAAATATGGTG
AGGGGTATGGGAAGGGAAGGG

Query= MSMg01no236_o22.b1 MSMg01no236_o22.b1 CHROMAT_FILE:
MSMg01no236_o22.b1 PHD_FILE: MSMg01no236_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:37 2005
         (720 letters)



>mm_chr1_177539250_177540369
          Length = 1120

 Score = 1015 bits (525), Expect = 0.0
 Identities = 636/690 (92%), Gaps = 36/690 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtggttactttcagcaagtccagtatgcgatggtgagaataaaagccgccat 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaattcagtggttacgttcagcaagtccagtatgcgatggtgagaataaaagccgccat 626

                                                                       
Query: 64  gccaagaatctacgagctcgctgctggaggcactgctgtggggacggggttaaacaccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccaagaatctacgagctcgctgctggaggcactgctgtggggacggggttaaacaccag 566

                                                                       
Query: 124 gatcggcttcgcagaaaaggtggccgcaaaagtagcagcactcacaggttggggaccaca 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatcggtttcgcagaaaaggtggccgcaaaagtagcagcactcacaggttggggaccaca 506

                                                                       
Query: 184 cgcattgctactcacgttcttcacatagcttatgcatcttgtagatatttctaggctgaa 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcattgctactcacgttcttcacatagcttatgcatcttgtagatatttctaggctgaa 446

                                                                       
Query: 244 ttcttctgaaattgaggagtaacatgttcccatcaaacatggcttgtgtccatgtcagaa 303
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttctgaaattaaggagtaacatgttcccatcaaacatggcttgtgtccatgtcagaa 386

                                                                       
Query: 304 gttaa-aaacgtttatcttacttttaaaggcttccatataaga-ttcatagg--catgcg 359
           ||||| ||| ||||||||||||||||| ||||||||||||||| |||||  |  ||||||
Sbjct: 385 gttaataaa-gtttatcttacttttaa-ggcttccatataagagttcat--gttcatgcg 330

                                                                       
Query: 360 tttacatgttttgtttgctgtctggtagcattcagtcctttctcttcaaagctatgttaa 419
           ||||||||||||||||| |||||| ||||||| ||||||||| |||||||||| ||||||
Sbjct: 329 tttacatgttttgtttgttgtctgctagcatttagtcctttcccttcaaagctgtgttaa 270

                                                                       
Query: 420 gtatttttcgaagaaagcagaaacagttgaccattgagaaacttatcacatgataagtgc 479
           ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 269 gtatttttcaaagaaagcagaaacagttgactgttgagaaacttatcacatgataagtgc 210

                                                                       
Query: 480 actgat------gtt----------------ctttgccgtaact-tctttaaataccatc 516
           ||||||      |||                |||||| |||| | ||||||||||| |||
Sbjct: 209 actgatagcttggtttttgcgtgtcatatttctttgctgtaa-tatctttaaatactatc 151

                                                                       
Query: 517 cccacac----tagtacagtattgttattgttattagaaccagcttgtcatgtccagaaa 572
           ||| | |    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cccccccccgctagtacagtattgttattgttattagaaccagcttgtcatgtccagaaa 91

                                                                       
Query: 573 actgattaagatgctgatgctaccataaggttagggtagtaataagtatagaatacatat 632
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 90  actgattaagatgctgatgctaccataaggttagggtagtaataagtatataatacatat 31

                                         
Query: 633 cacaagtatattcagnttttaaaatttgta 662
           ||||||||||||||| ||||||||||||||
Sbjct: 30  cacaagtatattcagtttttaaaatttgta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)