BAC Information

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BAC

Clone NameMSMg01-237A18
Chromosome1 (Build37)
Map Location 79,242,556 - 79,242,794
singlet/doubletsinglet
Overlap genenone
Upstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237A18.T7 (MSMg01no237_a18.b1)MSMg01-237A18.TJ (MSMg01no237_a18.g1)
ACCAG402117AG402118
length736732
length of high quality
(start - end)
239 (424 - 662)245 (58 - 302)
definitionCHROMAT_FILE: MSMg01no237_a18.b1 PHD_FILE: MSMg01no237_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:46 2005CHROMAT_FILE: MSMg01no237_a18.g1 PHD_FILE: MSMg01no237_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTT
CATACCTATGCTTTTTAATCTTGAAGCAAAAATCTAAACAGAATCCACAG
AAATGTGCTTCTCTCCTATGAGCCTGTAGGCAAGGGGGGTGATGTAGCAG
CTTTGCAGCATTAAGATATCCACACCTATAATAAAACTGTGGAAATACTA
AAAGAGTACATCTCAAAGAACCATCTGAGACTACCTGGAGCCCTCATCCT
GGCAAAGACACCTCTACTGAATCTTCCTAGGTTTGGAGAAATCTTTACTG
TCACCTACACTGATCTCATGGAACTCCTAATCAGATTTCTTTTTAGAACA
TTNNATACTGCCCCCCCCCCCCACCTGGCTTTGAATGTTGTATTCCCTAT
CCTAATTCGCTTGAAAGCAAGACTAAGAGAGATTTCTAAGAAGAAAGTGA
AGGCATATTCTGAAACATCATTCCAAAATGAGAGGGAAAAAAGCACCACA
GTGCTTAGACTCAACAGTGCCTGAATCCTAGAGGGGTTTCTGCAGGACTT
CTGTAGACTAAGTAGATTATTTAGATAGTTGTCAGTCCCCCAAAAGATGG
TCGGAGAAGGTGGGGTCCTGCATGCTAGTGGGGAAGCCAAAAGTAAAGAT
GCTTTTGCCTGAGACTGGCAACAAGGTTGAGAACCATCCTCTTCAAAGAC
GCATCACCTCCTTTAGTGTTAGAGCTGAAGCCCAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCAAATAGCAGAGAAGCACCTGAAAAAAT
GTTCACCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGTTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAATATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCTTGTT
TTTTATCCCCCCACCATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAACCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAA
CCTAGGATATCCCACATATAAGATATAATTTTGCTAACACATGATACTCA
AGAAGAATGACTACTGAACTGTGGACACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_a18.b1 MSMg01no237_a18.b1 CHROMAT_FILE:
MSMg01no237_a18.b1 PHD_FILE: MSMg01no237_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:46 2005
         (239 letters)



>mm_chr1_79242356_79242994
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagagagatttctaagaagaaagtgaaggcatattctgaaacatcattccaaaatgaga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 taagagagatttctaagaagaaagtgaaggcatattctgaagcatcattccaaaatgaga 380

                                                                       
Query: 61  gggaaaaaagcaccacagtgcttagactcaacagtgcctgaatcctagaggggtttctgc 120
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggaaaaaagcaccacagtacctagactcaacagtgcctgaatcctagaggggtttctgc 320

                                                                       
Query: 121 aggacttctgtagactaagtagattatttagatagttgtcagtcccccaaaagatggtcg 180
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggactcctgttgactaagtagattatttagatagttgtcagtcccccaaaagatggtcg 260

                                                                      
Query: 181 gagaaggtggggtcctgcatgctagtggggaagccaaaagtaaagatgcttttgcctga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gagaaggtggggtcctgcatgctagtggggaagccaaaagtaaagatgcttttgcctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)