BAC Information

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BAC

Clone NameMSMg01-237D07
Chromosome1 (Build37)
Map Location 28,202,558 - 28,203,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237D07.T7 (MSMg01no237_d07.b1)MSMg01-237D07.TJ (MSMg01no237_d07.g1)
ACCAG402224AG402225
length711730
length of high quality
(start - end)
562 (20 - 581)552 (75 - 626)
definitionCHROMAT_FILE: MSMg01no237_d07.b1 PHD_FILE: MSMg01no237_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:58 2005CHROMAT_FILE: MSMg01no237_d07.g1 PHD_FILE: MSMg01no237_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGAGAATCCGCGGAATTCCAAGGCATTCTCGGCTTAACA
GAGAAACCCTTATCTTGGAAAACCCAAACAAAAATAAAAAACAAACAACA
AAGAACTTGCTACATTACCTTAATCTAAAGATATAATTTAAAGCATATGT
ATGTATACATACATAGTTTGTATATGTACATATAGGTCTGTGTGTAAGCA
TACTTAAACTCATTTTTCCTACTTGGTCCTCAAAGTCCCTTTTGTAATAA
TGCAAACAACAAAGTCTAGCCTCATTTAAAATAACTTTCATTTAATTTGT
CCTATTTAAATATTGTTGTTTATCTAATTTCTGGTGAACAGCTCTGTAGG
CTAGAAATAATGAGAAAAGTTAAAAATATCGTCATACTTATTATTTCGAT
TTTCTATTTATTTAGACGACTGACTTGATTTCTTTCTTGTCCAGTACACA
AGTGAGAATGCCTCAGTGTCTGATAAAGTATTCAATTGTTTACTTAAGAA
ATCATTCAGCCATAATCAGTGTCTATGCACATTCATGCATGATCAAGTAA
GCATGGGTTTTCATGAACTACTGATGTGAAGTTACCAAACCAAAGATGTC
TCAGAAGCACAAAGACCGCATTTCTTAACATGGGATTTTCAAGAAGGGCA
TAAGTTAGTGACTAATACCATTAGTAGAATACCTGATTTAAAAAAAAGTA
TTTCTCCTATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTTGTAGCTCTGTACCCCATTTTT
AATGGGGTTATTTGAATTTCTGGCGTCCAGCTTCTTGAGCTCTTTGTATA
TATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATCCTTTCT
CAATCTGTTCCTGGCCTTTTTGTCTTAATGACAGTATCTTTTGCTTTACA
GAAGCTTTCCAACTTTATGAGGTCCCATTTGTCGATTCTTGATATAACAG
CACAAGCCATTGCTCTTCTGTTCAGAAATGTTTTCCCTGTGCCTATCTCT
TGGAGGCTTTTCCCCACTTTTTCCTCTATAAATTTCAGTGTCTCTGGCTT
TATGTGGAGTTCTTTGATCCACTTAGACTTGAGTTTGTACAAGGAGAGAA
GAATGGATCAATTATCATTTTTCTATATGATAACCACCAGTTGTGCCAGC
ACCATTTGATGTAAATGCTGCCTTTTTTCCACTGGATGGTTTTAGCTCCC
TTGTCAAAGATCAAGTCCAAAGGTGTGTGGATTCATTTACGGATCTTCAG
TTCTATTCCATTGATCTACCTGCCTGTCACTGTACCAGTACTATGGAGTT
TTATCACAATTGCTCTGTACAACAGCTTGAGGTCAGGTATGGTGATTCCC
CCAGAGGGTCTTTTATTGTTGAAGAATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_d07.b1 MSMg01no237_d07.b1 CHROMAT_FILE:
MSMg01no237_d07.b1 PHD_FILE: MSMg01no237_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:58 2005
         (562 letters)



>mm_chr1_28202354_28203314
          Length = 961

 Score = 1011 bits (523), Expect = 0.0
 Identities = 550/559 (98%), Gaps = 3/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggcattc-tcggcttaacagagaaacccttatcttggaaaacccaaacaaa 63
           |||||||||||||  | | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccaaggcagccat-ggcttaacagagaaaccctt-tcttggaaaacccaaacaaa 262

                                                                       
Query: 64  aataaaaaacaaacaacaaagaacttgctacattaccttaatctaaagatataatttaaa 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aataaaaaacaaacaaaaaagaacttgctacattaccttaatctaaagatataatttaaa 322

                                                                       
Query: 124 gcatatgtatgtatacatacatagtttgtatatgtacatataggtctgtgtgtaagcata 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 gcatatgtatgtatacatacatagtttgcatatgtacatataggtctgtgtgtaagcata 382

                                                                       
Query: 184 cttaaactcatttttcctacttggtcctcaaagtcccttttgtaataatgcaaacaacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttaaactcatttttcctacttggtcctcaaagtcccttttgtaataatgcaaacaacaa 442

                                                                       
Query: 244 agtctagcctcatttaaaataactttcatttaatttgtcctatttaaatattgttgttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtctagcctcatttaaaataactttcatttaatttgtcctatttaaatattgttgttta 502

                                                                       
Query: 304 tctaatttctggtgaacagctctgtaggctagaaataatgagaaaagttaaaaatatcgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctaatttctggtgaacagctctgtaggctagaaataatgagaaaagttaaaaatatcgt 562

                                                                       
Query: 364 catacttattatttcgattttctatttatttagacgactgacttgatttctttcttgtcc 423
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 catacatattatttcgattttctatttatttagacgactgacttgatttctttcttgtcc 622

                                                                       
Query: 424 agtacacaagtgagaatgcctcagtgtctgataaagtattcaattgtttacttaagaaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtacacaagtgagaatgcctcagtgtctgataaagtattcaattgtttacttaagaaat 682

                                                                       
Query: 484 cattcagccataatcagtgtctatgcacattcatgcatgatcaagtaagcatgggttttc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cattcagccataatcagtgtctatgcacattcatgcatgatcaagtaagcatgggttttc 742

                              
Query: 544 atgaactactgatgtgaag 562
           ||||| |||||||||||||
Sbjct: 743 atgaaatactgatgtgaag 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space:   524952
Effective search space used:   524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)