Query= MSMg01no237_e16.b1 MSMg01no237_e16.b1 CHROMAT_FILE:
MSMg01no237_e16.b1 PHD_FILE: MSMg01no237_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:05 2005
(321 letters)
>mm_chr1_55977961_55978679
Length = 719
Score = 571 bits (295), Expect = e-167
Identities = 309/315 (98%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 5 gaattccagtaccaataattgttctaatgtatcttgtttacaggcatttctgattataaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattccagtaccaataattgttctaatgtatcttgtttacaggcatttctgattataaa 457
Query: 65 acacagaacaagccccagg-ggggggggggctgagaaagatgaaggaccaaagattcgtt 123
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acacagaacaagcc---ggagtggggggggctgagaaagatgaaggaccaaagattcgtt 400
Query: 124 agcaatctcatagtaaaaggccatcataatccataaaccattgacccaatagagagaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agcaatctcatagtaaaaggccatcataatccataaaccattgacccaatagagagaaat 340
Query: 184 ttcccttttactttaaatcaattagcatttatacgtgagtcattccaaagccatcatatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttcccttttactttaaatcaattagcatttatacgtgagtcattccaaagccatcatatt 280
Query: 244 tataagccattatagtatatacctaatgtattgatcatcacacagtcagttattaattaa 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 279 tataagccattatagtatatacctaatgtattgatcagcacacagtcagttattaattaa 220
Query: 304 tggcatcatgacttt 318
|||||||||||||||
Sbjct: 219 tggcatcatgacttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space: 221520
Effective search space used: 221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_e16.g1 MSMg01no237_e16.g1 CHROMAT_FILE:
MSMg01no237_e16.g1 PHD_FILE: MSMg01no237_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:05 2005
(288 letters)
>mm_chr1_55852193_55852880
Length = 688
Score = 472 bits (244), Expect = e-137
Identities = 270/286 (94%), Gaps = 12/286 (4%)
Strand = Plus / Plus
Query: 1 ttctcactcttgcatctgtggagctctctgactcttggatgctgcagcccatttatggct 60
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 213 ttctcactcttgcatctgtggagctctctgactcttg------------catttatggct 260
Query: 61 tggctttcaaaagtgatgcattctctgtactttacagtttccctacaggcactgctgaga 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tggctttcaaaagtgatgcattctctgcactttacagtttccctacaggcactgctgaga 320
Query: 121 ggagttttctggccaaagcagataacgttattgttttgcgtgaataaaacatttgtttag 180
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 321 ggagttttctggccaaagcagataacgttattgttttgcatgaataaaacatctgtttag 380
Query: 181 atttatttagagtgatgtaaatatctaaacaattatttagaatacaatatcataggcata 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatttagaatgatgtaaatatctaaacaattatttagaatacaatatcataggcata 440
Query: 241 ttttatccacttaacaaaatgacagctgtggcttctttaccagggg 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatccacttaacaaaatgacagctgtggcttctttaccagggg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
