Query= MSMg01no237_f17.b1 MSMg01no237_f17.b1 CHROMAT_FILE:
MSMg01no237_f17.b1 PHD_FILE: MSMg01no237_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:10 2005
(663 letters)
>mm_chr1_38469698_38470760
Length = 1063
Score = 1176 bits (608), Expect = 0.0
Identities = 647/662 (97%), Gaps = 6/662 (0%)
Strand = Plus / Plus
Query: 5 gaattccacatttcacctcaaatgacacatgatggtcagaagtcaggcacataaacacac 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatctcatctcaaatgacacatgatggtcagaagtcaggcacataaacacac 264
Query: 65 cacata---ttgttccctatgatctatgtgtgtacagtacatgccagccataaacgcatt 121
|||||| || || ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 265 cacataaagtt-tt--ctatgatctatgtgtatacagtacatgccagccataaacacatt 321
Query: 122 tcatttagacttcaggcttatcccatgcaacctcattatacatatgaaaatattccaaat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatttagacttcaggcttatcccatgcaacctcattatacatatgaaaatattccaaat 381
Query: 182 attttaaaacaccaaatgcttatgagatgcttaatcctagcaatttgagatagaataatc 241
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 attttaaaacaccaaatgcttatgaaatgcttaatcctagcaatttgagatagaataatc 441
Query: 242 aactattacagatttaatactcctgtcagattcctagcaacaggataaggtcgcccagtt 301
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 442 aactattacagatttaatactcctatcagattcctagcaacaggataaggtcgccgagtt 501
Query: 302 atattatgataacgaaagctagtgacatcaatcggagcttgtagataaaagtacacttgg 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 502 atattatgataacgaaagctagtgacatcaatcggagcttgtagataaaagtacacatgg 561
Query: 362 ctgtcagcaagtttagtggtgtatcagtgggctgcccttgtcaaaagcctattgatgtca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctgtcagcaagtttagtggtgtatcagtgggctgcccttgtcaaaagcctattgatgtca 621
Query: 422 tgaaggaattagacacagagacagtggctttatatcttggtcactgatggatattgagtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgaaggaattagacacagagacagtggctttatatcttggtcactgatggatattgagtg 681
Query: 482 ctttgctgtggggtcatgtctcaatgaagtgcccagtgctgaagtcagggtcatcttcca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttgctgtggggtcatgtctcaatgaagtgcccagtgctgaagtcagggtcatcttcca 741
Query: 542 gactgtcctgacgacatggggtaaacaaaccacaaggcagtcatctaagaacacttgtaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gactgtcctgacgacatggggtaaacaaaccacaaggcagtcatctaagaacacttgtaa 801
Query: 602 tcaacattgacaagaacatggcaagacctcttcgttcttcatcctgaattactcctccca 661
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 802 tcaacattgacaagaacatggcaagacctcttcgttcttcatcctgaatcactcctccca 861
Query: 662 gc 663
||
Sbjct: 862 gc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_f17.g1 MSMg01no237_f17.g1 CHROMAT_FILE:
MSMg01no237_f17.g1 PHD_FILE: MSMg01no237_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:10 2005
(493 letters)
>mm_chr1_38601061_38601953
Length = 893
Score = 876 bits (453), Expect = 0.0
Identities = 483/493 (97%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 1 catatatggaattccacctcaacaggataaaatagggaaatggattcacaactcttgcaa 60
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 869 catatatggaattccacctcaacaggataaaatagggaaatggatt-ataactcttgcag 811
Query: 61 tctagagtcagtgaggggctgatgttgtcttaattgaagtaatatgactggtttttgctg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 810 tctagagtcagtgaggggctgatgttgtcttaattgaagtaatatgactgttttttgctg 751
Query: 121 ccgctgctgctgttgttgttgttgttttgttttgtttggtttggtttgatgttttgtatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ccgctgctgctgttgttgttgttgttttgttttgtttggtttggtttgatgttttgtatc 691
Query: 181 cttttaaattattatttgcttattttgtttttgactacagaatttgtaaaattgagtcaa 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttttaaattattttttgcttattttgtttttgactacagaatttgtaaaattgagtcaa 631
Query: 241 tcttgtgtgactagcaaatcttaaaagaatagtcaccatttgaaattaacacccttcagc 300
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tcaagggtgactagcaaatcttaaaagaatagtcaccatttgaaattaacacccttcagc 571
Query: 301 ctgacatttactaacaaaggatgggggtaccatttgtcaaagcttgtcagggggctgtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgacatttactaacaaaggatgggggtaccatttgtcaaagcttgtcagggggctgtcc 511
Query: 361 ccagagaggcagtgcagtggagtctaggaattctatgtctggtgccagactgccgggctt 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 510 ccagagaggcagtgcagtggagtcgaggaattctatgtctggtgccagactgccgggctt 451
Query: 421 ctaagtgaagagcttctcctggctgcccgtgggacaggaccagttagctatgctcagagc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 450 ctaagtgaagagcttctcctggctgcccgtgggacagggccagttagctatgctcagagc 391
Query: 481 ctcttgttttctt 493
|||||||||||||
Sbjct: 390 ctcttgttttctt 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
