XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATATA
TGGAATTCCACCTCAACAGGATAAAATAGGGAAATGGATTATAACTCTTG
CAATCTATAGCCCGTGAGGGGCTGATGTTGTCTTAATTGAAGTAATATGA
CTGGTTTTTGCTGCCGCTGCTGCTGTTGTTGTTGTTGTTTTGTTTTGTTT
GGTTTGGTTTGATGTTTTGTATCCTTTTAAATTATTATTTGCTTATTTTG
TCTTTGACTACAGAATTTGTAAAATTGAGTCAATCAAGGGTGACTAGCAA
ATCTTAAAATATTTTTCACCATTTGAAATTAACACCCTTCAGCCTGATTT
TTTTTTTCTCCCCCTGCCCCCCACCATTTGTCAAAGCTTGTCAGGGGGCT
GTCCCCCCCACAACAATAAAAAAAAGTCTAGGAATTCTATGTCTGGTGCC
AGACTGCCGGTTTTCTAAGTGAATAGCTTCTCCTGTCTGCCCGTGTTACA
GGATCAGTTAGCTATGCTCAGAGCCTCTTGTTTTCTTCATTGCAATCTAA
TGATAATGTTTCTTGTCATTTTTAAGATTTATTATATTAAATAACTCACG
TGTTATTTATTTGCCCCACCTCTCTTTTTGTTTCAAATTCCAATTCATAT
CATATGTCTTTCTTTTTTATCGTCATAAATCTTTCCTCTATTTTTCCCCT
TCACCTTTTTCGCATTTACCCTTCCCCCCCTACTCTAAAATTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATAATTACGCACAGATTTATTAGG
TCCCAGGATTAAAAATTCTCTGACTAAGAGTAAAAAAAGTAATGATACTT
TAGAATGTATGGTAATATTCAAATGACTTGAAAACAGTCACCTCAGCAAA
AATAAAAGAACGCAGAAGCCCAAGTTAAAAGATGTGGTTGGCAATGTGAG
CCATAAACCTGTGTGGGTTTACCATGTGGTCACACGGGCTGGCATTTTCA
CATGTGGGAATCCCCATTGCAGCAGAATGGCCCAGCTTCCTTCCTTCAAT
CACTGAGAACTGATTTTACACCCTACACCTCTAAACATCTCCCGGCCCTA
TGCTCAATCTGATTTCCCGTTTCTGTTCGCAGATGGACCTTCCCTTCCTG
GGCCTTAAGCACTTGCTCTCTTGTTTCCAGCCTCTCTCCTGGAAAATGTG
GCCTTATCTGTCCTGTTATTACCTATTATCTGAGTTGTCTGCTGTGAGCT
ACTTCATCTACATGACTGTCTTTGTTCCTTGGATGTCTCAAGTCAACTCA
ACACAGCATGTCTATAAAATGCATTTGTATCTCCTCCGTCTCACTGAAAC
AAAGTAATCCAGAGTGCCACCATTGCTCAGAGTCTGCGTACCTAAACATC
TCTCCTCTGCACATTTCAAGGGCTTCCACCCTTTCTTCN

Query= MSMg01no237_g08.b1 MSMg01no237_g08.b1 CHROMAT_FILE:
MSMg01no237_g08.b1 PHD_FILE: MSMg01no237_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:13 2005
         (254 letters)



>mm_chr1_38601593_38602246
          Length = 654

 Score =  431 bits (223), Expect = e-125
 Identities = 244/251 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatatatggaattccacctcaacaggataaaatagggaaatggattataactc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggaattccatatatggaattccacctcaacaggataaaatagggaaatggattataactc 285

                                                                       
Query: 64  ttgcaatctatagcccgtgaggggctgatgttgtcttaattgaagtaatatgactggttt 123
           ||||| |||| || | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 284 ttgcagtctagagtcagtgaggggctgatgttgtcttaattgaagtaatatgactgtttt 225

                                                                       
Query: 124 ttgctgccgctgctgctgttgttgttgttgttttgttttgtttggtttggtttgatgttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttgctgccgctgctgctgttgttgttgttgttttgttttgtttggtttggtttgatgttt 165

                                                                       
Query: 184 tgtatccttttaaattattatttgcttattttgtctttgactacagaatttgtaaaattg 243
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 164 tgtatccttttaaattattttttgcttattttgtttttgactacagaatttgtaaaattg 105

                      
Query: 244 agtcaatcaag 254
           |||||||||||
Sbjct: 104 agtcaatcaag 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no237_g08.g1 MSMg01no237_g08.g1 CHROMAT_FILE:
MSMg01no237_g08.g1 PHD_FILE: MSMg01no237_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:13 2005
         (358 letters)



>mm_chr1_38459710_38460467
          Length = 758

 Score =  667 bits (345), Expect = 0.0
 Identities = 354/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaacatctcccggccctatgctcaatctgatttcccgtttctgttcgcagatggacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 taaacatctcccggccctatgctcaatctgatttcccgtttctgttcacagatggacctt 260

                                                                       
Query: 61  cccttcctgggccttaagcacttgctctcttgtttccagcctctctcctggaaaatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttcctgggccttaagcacttgctctcttgtttccagcctctctcctggaaaatgtgg 320

                                                                       
Query: 121 ccttatctgtcctgttattacctattatctgagttgtctgctgtgagctacttcatctac 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 321 ccttatctgtcctgttattacctattagctgagttgtctgctgtgagctacctcatctac 380

                                                                       
Query: 181 atgactgtctttgttccttggatgtctcaagtcaactcaacacagcatgtctataaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactgtctttgttccttggatgtctcaagtcaactcaacacagcatgtctataaaatg 440

                                                                       
Query: 241 catttgtatctcctccgtctcactgaaacaaagtaatccagagtgccaccattgctcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttgtatctcctccgtctcactgaaacaaagtaatccagagtgccaccattgctcaga 500

                                                                    
Query: 301 gtctgcgtacctaaacatctctcctctgcacatttcaagggcttccaccctttcttc 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgcgtacctaaacatctctcctctgcacatttcaagggcttccaccctttcttc 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)