Query= MSMg01no237_g24.b1 MSMg01no237_g24.b1 CHROMAT_FILE:
MSMg01no237_g24.b1 PHD_FILE: MSMg01no237_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:16 2005
(322 letters)
>mm_chr1_163794162_163794883
Length = 722
Score = 551 bits (285), Expect = e-161
Identities = 308/317 (97%), Gaps = 4/317 (1%)
Strand = Plus / Minus
Query: 4 ggaattctactcctccctttgttaaacttgcagagaggttttggcctagaagagttacaa 63
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctattcctccctttgttaaacttgcagagaggttttggcctagaagagttacat 459
Query: 64 actggttcagagtactgccagcctggagtgtttgtgcttgt--agtttgttacttctagc 121
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 458 actggttcagagtactgtcagcctggagtgtttgtgcttgtagagtttgttacttctagc 399
Query: 122 tgtcagtgtccttaatgtaaggctagcttacaggttttacttccatgctttgaagtagtc 181
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 398 tgtcagtgtccttaa--taaggctagcttacaggttttacttccatgatttgaagtagtc 341
Query: 182 taggcgggttttagaattatctttaaatatttataaatggctctggcatctggacacttt 241
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 340 taggcgggttttagaattatctttaaatatttgtaaatggctctggcatctggacacttt 281
Query: 242 ctcaggaggctaactctgacaactttctgtaccttctgtgataattaccacatactgctt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctcaggaggctaactctgacaactttctgtaccttctgtgataattaccacatactgctt 221
Query: 302 ctgttgtttttgttgta 318
|||||||||||||||||
Sbjct: 220 ctgttgtttttgttgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_g24.g1 MSMg01no237_g24.g1 CHROMAT_FILE:
MSMg01no237_g24.g1 PHD_FILE: MSMg01no237_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:16 2005
(290 letters)
>mm_chr1_163642478_163643167
Length = 690
Score = 493 bits (255), Expect = e-144
Identities = 285/299 (95%), Gaps = 10/299 (3%)
Strand = Plus / Plus
Query: 1 ttggggaatttaagtggagagcttcaaaagaaaccatgcagctactccacccaaggagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 ttggggaatttaagtggagagcttcaaaagaaaccatgcagctactccagcaaaggagtt 260
Query: 61 aagggagaaaaacaatgtcccatttttgaatagcaaatgtgttgagcatttctttctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggagaaaaacaatgtcccatttttgaatagcaaatgtgttgagcatttctttctggt 320
Query: 121 ttaaagagggatatagaaaagatgtgtgtgtgg-gagagagagagagagagagaga-a-- 176
|||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct: 321 ttaaagagggatatagaaaagatgtgtgtg-ggagagagagagagagagagagagagaga 379
Query: 177 -----agagagagagagagagagaattcttatgtagaaaagtcagaagtatacttttact 231
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 380 gagagagagagagagagagagagaattctgatgtagaaaagtcagtagtatacttttact 439
Query: 232 aattctgttttttgattaaaatttatgcttaatcactaccaccaaatcttgcagcaata 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aattctgttttttgattaaaatttatgcttaatcactaccaccaaatcttgcagcaata 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
