Query= MSMg01no237_i02.b1 MSMg01no237_i02.b1 CHROMAT_FILE:
MSMg01no237_i02.b1 PHD_FILE: MSMg01no237_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:21 2005
(673 letters)
>mm_chr1_14235288_14236360
Length = 1073
Score = 1077 bits (557), Expect = 0.0
Identities = 641/685 (93%), Gaps = 26/685 (3%)
Strand = Plus / Plus
Query: 5 gaattcagccacaaaattcttatcttactacctgatatttattgaacattaaataactat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 gaattcagccacaaaattcttatcttactacctgatatttattgaacattaaatagctat 240
Query: 65 gtaccttcaggacccattgtaccaaaactgactcactaatacattctgacttttggtaac 124
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtaccttcaggatacattgtaccaaaactgactcactaatacattctgacttttggtaac 300
Query: 125 tcatcaaaagcaagttaggcaaacctgtaagataggggcaaatagaattgacctcagggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatcaaaagcaagttaggcaaacctgtaagataggggcaaatagaattgacctcagggt 360
Query: 185 acattgccaggctgtgtctaataatgatcttaaaactataagccctgaattgcacttggg 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 361 acattgccaggctgtgtctaataatgaacttaaaactataagccctgaattgcacttggg 420
Query: 245 tacatttgattatatattattctgaagataatcattgatatatttagtaggaactgttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacatttgattatatattattctgaagataatcattgatatatttagtaggaactgttct 480
Query: 305 gagagatttgggactaaatatatgttttcaaggcaaatgacttaaccaagaatagtggct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gagagatttgggactaaatatatgttttcaaggcaaatgacttaaccaagaatagtggct 540
Query: 365 gggttgcaaattatatctatatgattcatgtgattaaatatatatatatatatatataca 424
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 541 gggttgcaaattatatccatatgattcatgtgattaaatatatatatatatatatatata 600
Query: 425 cacacacac------------------------acatacacacacacatataaatatata 460
| | | | | ||||||||||||| |||||||||||
Sbjct: 601 tatatatatgtatatatatatatatgtatatgtatatacacacacacacataaatatata 660
Query: 461 tgtatatatacatatggtaacattggactgcctctcccaggtttaggggacatgcctggc 520
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 661 tgtatatatacgtatggtaacattggactgcctctcccaggtttaggggagatgcctggc 720
Query: 521 agttttgtttctcattctgtcacatggaggcccttcaggagcacagagttctgaagctct 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agttttgtttctcattctgtcacatggaggcccttcaggagcacagagttctgaagctct 780
Query: 581 atccctttcttcaagtcctttgctctagtttcatgtgccttggcagaaatcanagatata 640
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 781 atccctttcttcaagtcctttgctctagtttcatgtgccttggcagaaatca--gaaata 838
Query: 641 tatatatatatatatatacctatat 665
||||||||||| ||||||| |||||
Sbjct: 839 tatatatatatgtatatacatatat 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 138
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_i02.g1 MSMg01no237_i02.g1 CHROMAT_FILE:
MSMg01no237_i02.g1 PHD_FILE: MSMg01no237_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:21 2005
(657 letters)
>mm_chr1_14287199_14288255
Length = 1057
Score = 1239 bits (641), Expect = 0.0
Identities = 653/657 (99%)
Strand = Plus / Minus
Query: 1 ctgcagtaattcaaatagtaactgtgaattggtgtatcagatttccaagatcgtggtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctgcagtaattcaaatagtaactgtgaattggtgtatcagatttccaagatcgtggtctt 798
Query: 61 ggattaggtggctaaattgcccgaatttcaaactttttcaattgtgttttgcatatttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggattaggtggctaaattgcccgaatttcaaactttttcaattgtgttttgcatatttta 738
Query: 121 ggatggtaggttgatacaattgtccacatctttgtcaccagaatctattttaaagtgact 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 737 gggtggtaggttgatacaattgtccacatctttgttaccagaatctattttaaagtgact 678
Query: 181 tctacaaagtaatttctacaaagttcagaacactagcaaatgatttgaactagttttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctacaaagtaatttctacaaagttcagaacactagcaaatgatttgaactagttttctt 618
Query: 241 ccctgtatatttcagtaagatacagctctggctgatgagggtacctctactcagtcttgt 300
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 ccctgtatacttcagtaagatacagctctggctgatgagggtatctctactcagtcttgt 558
Query: 301 ttacaggaagtctcccaacggagtgaatgtgtacagtgaggctctgctgctgcgttttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttacaggaagtctcccaacggagtgaatgtgtacagtgaggctctgctgctgcgttttac 498
Query: 361 tgacaatatttgtgtatctgtggttgaatattctgatgtcaatagaaacatgttaatcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgacaatatttgtgtatctgtggttgaatattctgatgtcaatagaaacatgttaatcta 438
Query: 421 atattactcctgtttatgttctgcacataattcagtttctgtgagattaagggacactat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atattactcctgtttatgttctgcacataattcagtttctgtgagattaagggacactat 378
Query: 481 gaggaaaggcattcctaaataacatttttagggttttgactgtggccacaaaattggctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaggaaaggcattcctaaataacatttttagggttttgactgtggccacaaaattggctt 318
Query: 541 cttagaaattactctaaagcaaaacctatgaaggattaaaattattagtcagaatttaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttagaaattactctaaagcaaaacctatgaaggattaaaattattagtcagaatttaat 258
Query: 601 atttgctatgttttatatacatggcaataattctcacatgtctgttagtaacgccaa 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atttgctatgttttatatacatggcaataattctcacatgtctgttagtaacgccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
