BAC Information

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BAC

Clone NameMSMg01-237L01
Chromosome1 (Build37)
Map Location 176,933,950 - 176,934,423
singlet/doubletsinglet
Overlap genenone
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237L01.T7 (MSMg01no237_l01.b1)MSMg01-237L01.TJ (MSMg01no237_l01.g1)
ACCAG402566AG402567
length766732
length of high quality
(start - end)
54 (482 - 535)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no237_l01.b1 PHD_FILE: MSMg01no237_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:34 2005CHROMAT_FILE: MSMg01no237_l01.g1 PHD_FILE: MSMg01no237_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCCTCNTTNTTTTTNCCCCCCGGCCCCCCCANNCNNNNNTTCTATA
ATTGGGCGCTAATAGATCCTAATTTCGAAGNCGANGGAANCNNNGGTTTC
CCAAGAGAAACGNCNCNAGNAAANNNGANNNANANNNNCCNAGNAGAAAA
ACCCCCCAGAGGAGAAACAGGGCNACCANANCCCNAGAAGGGAGCACAGG
NCNCACCACANAAAAGAAGAACAAGGAANACNGGNGGAGCAAAGGAAGGG
AGANCAACACCNCCGAGAAANNACAGAGGTTGCNANNGGCNAGNANNCAN
ACACCCAGACAANAAGGGANANCCGAGAAGGGAAAAGNCGGGGATTTTTT
TTTTATCANACCNCCGGCCCCCACNCGGGAAANAAAGCAAATTTAAGTGC
ACCATTCATGCAGCAAATATTTACTGAATGCACATGTGCTCATGAGGCTT
GGTGTCCATTCTGCATTTTATAACTCTGTTTAGATCTTTGCTTAGATCAG
CCTAATTATAAATAATGTAAATAAAATGGACTTCCACTGAACTTTTGAAG
TACTCGCAGAGAATGTTTCTTGTTAACATCAAACAGACCCCCTTCTACCT
TAAGCCAAGCTTATCAAATTATTTTCTAACATACTGTTTTCCAAGCAAAA
TTGGGACGTTCTTTCTCAAGAAAAAAGGGTTTTTTTTTTTGTTTTTGGGA
ATGCAATGCAAACTTCAATAACGAGTCCTGGTGGTGATTACATGGCGCCC
ATGAACCAAGTTATAT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAACCAGTTATAGTAGGTGA
GTCACTGAACAGAAAGATCCTTTGGACTCTGGAAATTGGCAGGGGAAGAC
TTTCTCCTAAAGATATTTTCATCCAATATTTGAATTACATAAGTGTCAAA
ATATGTCATTTGGAAGATGGTATTTTCAGCTCACACAAAATTACTTTTTT
GAAAATAATATTTATAGAATATAGAATATGTCATTAATTATCTTTATTTT
AAAATTAGAAAACTAAGACACATGTGTGCATCATGCTTTGTTTGCCAAAC
TTTAATTTTATAATTAACTTCTGTGATTGTAATTTGTCTTCATTGTTAAT
GATAATTTCTATAACATTGTAGCAACTGAGTAAAAATTTATCGTTCTTTG
GTCTGCTTCTAGAAAGAAACATCCTTATTTTTTTTTAAAGATTGTCACAA
AAAGTCTAATTTAGCAATAAAGTTTTAACAGGTGAAAAGACATATGGATA
AATAAAAATGAGACAAAGAAAATACATTACAATATCCACCAAAGAACATA
GAGGGCCTGAGTATTTGTTCTATGAATGCTTATTTTACATTTTACTTAAC
TCTAATTTTTGAAGAACTGTTTTTATTGGCAATAAGAAAAAAATTTATAC
CACAACCCCTTCTCCTAAGGTTCCAGGATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_l01.g1 MSMg01no237_l01.g1 CHROMAT_FILE:
MSMg01no237_l01.g1 PHD_FILE: MSMg01no237_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:34 2005
         (505 letters)



>mm_chr1_176933519_176934423
          Length = 905

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%), Gaps = 1/475 (0%)
 Strand = Plus / Minus

                                                                       
Query: 29  ctgaacagaaagatcctttggactctggaaattggcaggggaagactttctcctaaagat 88
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 905 ctgaacagaaagatcctttggact-tggaaattggcaggggaagactttctcctaaagat 847

                                                                       
Query: 89  attttcatccaatatttgaattacataagtgtcaaaatatgtcatttggaagatggtatt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 attttcatccaatatttgaattacataagtgtcaaaatatgtcatttggaagatggtatt 787

                                                                       
Query: 149 ttcagctcacacaaaattacttttttgaaaataatatttatagaatatagaatatgtcat 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttcagctcacacaaaattacttttttgaaaataatatttatagaatatagaatatgtcat 727

                                                                       
Query: 209 taattatctttattttaaaattagaaaactaagacacatgtgtgcatcatgctttgtttg 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 taattatctttattttaaaattagaaaactaagacacatgtgtgcatcatgctttgtttg 667

                                                                       
Query: 269 ccaaactttaattttataattaacttctgtgattgtaatttgtcttcattgttaatgata 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccaaactttaattttataattaacttctgtgattgtaatttgtcttcattgttaatgata 607

                                                                       
Query: 329 atttctataacattgtagcaactgagtaaaaatttatcgttctttggtctgcttctagaa 388
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atttctataacattgtagcaattgagtaaaaatttatcgttctttggtctgcttctagaa 547

                                                                       
Query: 389 agaaacatccttatttttttttaaagattgtcacaaaaagtctaatttagcaataaagtt 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agaaacatccttatttttttttaaagattgtcacaaaaagtctaatttagcaataaagtt 487

                                                                  
Query: 449 ttaacaggtgaaaagacatatggataaataaaaatgagacaaagaaaatacatta 503
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttaacaggtgaaaagacatatggataaataaaaatgagacaaagaaaatacatta 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)