BAC Information

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BAC

Clone NameMSMg01-237N07
Chromosome1 (Build37)
Map Location 71,142,274 - 71,142,563
singlet/doubletsinglet
Overlap geneBard1
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
Downstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N07.T7 (MSMg01no237_n07.b1)MSMg01-237N07.TJ (MSMg01no237_n07.g1)
ACCAG402666AG402667
length742981
length of high quality
(start - end)		294 (69 - 362)---
definitionCHROMAT_FILE: MSMg01no237_n07.b1 PHD_FILE: MSMg01no237_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:45 2005CHROMAT_FILE: MSMg01no237_n07.g1 PHD_FILE: MSMg01no237_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTGATATTACACTAATGAAGCAGAAGTATTTAACTGAATGGCT
CTCCTAAACTCCCAAGAGGTACTAACTGCTAGTTAATATTAGCTGGAACA
AGGACTCCAGTGCTCTTAAATTGTAAGGTATCCTCAAGGTATTTTTAAGT
TACAGATCAGTGTGTTTAACATGAAATTGTACAAACTTCCCAAGCTAATT
AAGCAACTTGTTACATTTCCCTTTAAGAGAATGAGAGAAAAGATAAATGA
GTAATACCTTATTCATTTGGTTTAGGTTTTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTTTTTTTTTTCCTCTCCTCCTCCCCCNTCTTTTTCTCTTTT
TTTTTTTTTCTCCCCCCCCCCCCTATAACTTTTTCCTCTTTTTTCCCCCC
TTTTTTTCTTTCTTTTTTCTTCTCTCTCCCCTTTCTTTTTTTTTCTTTCT
CTCCCTTTTTTTCTCCTTCTCCCCCTTTTTTTNTTTTTTCTCTCCTCCCT
CCTTTTTTTTCTCTCCTCCTTTCCTTTTTCCTTTTCTTTTTTTTTTCTCT
CCCCTTTCTTCCCTCTTTTCTTCTTTCCCTTTTTCTTTCCCCTTCTTCCC
TTTTTTTCTCTTTTCTTTCCCCCTCTTTTCCTTCTTTCCCTCTTCCTCCC
CCCCTTCCTTTCTTTTCTTCCCCCCCCTCTTCCTTTTTTTTC

TTTTTGGGTTGTNNTCCCCCCTCTCTCTTACCACAAAAATACGTTCTGTC
GAATGATATGAGGAGGCCTGGAGAAAGATTGTCATCAGGAGGAGAGGGNG
AANNANNAGAAGGTTCTCTCGAAAAAGGGGGGAAGAAAGAAGAAAAGATA
AGGTAAGAGTGTATTAGAATGGTTTTTTTGCCCCGCTATTAGTTGTGAAG
TGATGAGATGTGTAGGTTTGTGGAGTTGTTTTTAGTTATGAGGGTGTAGT
GTGTATAGTTTAGGAGAGTAGAGTAAAACTAGGTCGAAGAGTAATAATGT
CAAAAGGTGAAGGTGATGGGAATTGTGAAGTTGTTTTTTGGAGAGTGTAT
ATACTTAGAGAAGAAGAAGAGAAGTATTTGAATAGATGAGATTAATGTAT
GATATATCCAGTTATTTTTTTTATTATCAGGTGACGATAGAATATTGTTA
TGTAAAATGTTGAGTTTATATATATAATGGTAATTTTAAGATGTGTTGGT
AGAGAGTAAATTATTAATGTATAGGGTTGCTTACCCCCCCCCTGTGGTGT
GTAATTATATTTTTATTAACTATCTATCGATTATGAATAAGATATAGATA
TTGATAAGATGATGATAAAACTATTTTTAGAATGATAATGATGTAGGTGC
TTGTAGTTGATCATCATATTAATAGAGCACTCATTGATCGGAAAAGCTGG
TGAATGTTCGACAAACTTAGAAATTTTGCGCTTTCGACGATCACATATAT
TGTCGCAGGCTCTGGTGAGTGATGTTTTCTACTATATATAATTTTTCTCT
TCTACTCTGCTCTACATCCGCCGTTATGTATTTCATATAGCTTTACGGTA
TATAATAATTGATGAAGTAGAGTAGTGGTAAGGCACTAAACCATATAACA
TAAATGGTTAACGTCGACTTGGTATGCGCTAATTTGACCATCGATATCAA
GCCGTTTATGAGTAATAATGTGATATTAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n07.b1 MSMg01no237_n07.b1 CHROMAT_FILE:
MSMg01no237_n07.b1 PHD_FILE: MSMg01no237_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:45 2005
         (294 letters)



>mm_chr1_71142074_71142767
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatgaagcagaagtatttaactgaatggctctcctaaactcccaagaggtactaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatgaagcagaagtatttaactgaatggctctcctaaactcccaagaggtactaactg 260

                                                                       
Query: 61  ctagttaatattagctggaacaaggactccagtgctcttaaattgtaaggtatcctcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagttaatattagctggaacaaggactccagtgctcttaaattgtaaggtatcctcaag 320

                                                                       
Query: 121 gtatttttaagttacagatcagtgtgtttaacatgaaattgtacaaacttcccaagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatttttaagttacagatcagtgtgtttaacatgaaattgtacaaacttcccaagctaa 380

                                                                       
Query: 181 ttaagcaacttgttacatttccctttaagagaatgagagaaaagataaatgagtaatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagcaacttgttacatttccctttaagagaatgagagaaaagataaatgagtaatacc 440

                                                             
Query: 241 ttattcatttggtttaggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcatttggtttaggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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