CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGGCCTTTCCAAATAAAGAAAGTTATAAATTGTTGTGGAAAT
CTGATGTATAACTATCAATGGTATTCTACAGAACAGAAACATATATACAT
TAAAAATATAGAATAAAATACAAGCAAAATAGCAACTAGTTTAATGTTTT
AATCGGTGTTCTTATTGTACTTGGAGATTAAGAATTATGATTAGCATATG
TATAATTGTGGTGATCTATGATAGCTAAATACCTTGGAATTTTGAAACAC
TGTGACAAAGATCACAGATTTCATTTTATTGTTTGAAAAGTTGGAAAACT
AAGGTATGAGGAAACAAAATAGTATTGAATGTTGCTATGTTACAAGTGTA
TTTTAGAAGAAAATACAAGATGAAAAGATCTGAATCAATGAGATAAAGAT
GGGGGTGACAAAGTAGGGAAGTGTTATGATTTCTTAAAACTGTTTATTGA
GTCATATTACATCTGAACATACAGAATTCTATTTCTCTAATTGGAAGGGT
GCTTATCACATAAAAGTACAATTCAGGATTTAGCTTTCTCATTGCTTGAA
TCATTTTTATAATTAAATTCACTGCATTTCTATCAGGTAACTCCTGATTA
ACTGCAAGATTAACAGAAAGGTACAAGGAATCACTGGTATAGCAGTTACA
CAGAATGCAATCACTCTCAAAGCCAATTTGGAAGTCAGTCCAGGAGAATA
TAATN

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCCGAAAATCTTTGTTTAGCTCTGAACGCCATCTT
TTAATGGGTTTTTTTGATTTTCTGGCCCCCACTTTCTTGAGTTCTTTTTA
TATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGCGTTTTTGTCTTATTGACCGTGTCTTTTGCCTTA
CAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCAATCCTAG
AGCACAAGCCATTGCTGTTCTATTCATATTAATTTCCCCTGTACGGATAT
CTGAGAGGGTTTTCCCTTTTTTCTCCTCCACAAGTTTCAGTATCTCTGGT
TTTATGTGGAGTTCCTTAATCCACTTAGATATGACCTTAGTACAAGGAGA
TAGGAATGAATCAATTTGCATTCTTCTACATGATAACTGCCAGGTGTGCC
AGCACCATATGTGGAAAATGCTGTCTTTATTCCACTGGATGGTTTTTGCT
CCCTGAGATTCCACCTCACACTAGTCATAATGGCTAAGATAAAAAATTCA
GGTGACAGCATATGCTGGTGAAGTTGTGGAGAAAGAGGAACACTCCTCCA
TTGCTGGTGGGATTTCAAGCTTGTACAACCACTCTGGAAATCAACCTGGC
AGATCCTCAGAACAATTGGACATAGTACTTTCGGGGGATCCCGCAATACC
TCT

Query= MSMg01no237_o21.b1 MSMg01no237_o21.b1 CHROMAT_FILE:
MSMg01no237_o21.b1 PHD_FILE: MSMg01no237_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:52 2005
         (547 letters)



>mm_chr1_29952838_29953784
          Length = 947

 Score = 1000 bits (517), Expect = 0.0
 Identities = 535/541 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacagaaacatatatacattaaaaatatagaataaaatacaagcaaaatagcaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagaacagaaacatatatacattaaaaatatagaataaaatacaagcaaaatagcaacta 682

                                                                       
Query: 61  gtttaatgttttaatcggtgttcttattgtacttggagattaagaattatgattagcata 120
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattaatgttttaatcagtgttcttattgtacttggagattaagaattatgattagcata 622

                                                                       
Query: 121 tgtataattgtggtgatctatgatagctaaataccttggaattttgaaacactgtgacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtataattgtggtgatctatgatagctaaataccttggaattttgaaacactgtgacaa 562

                                                                       
Query: 181 agatcacagatttcattttattgtttgaaaagttggaaaactaaggtatgaggaaacaaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 agatcacagatttcattttattgtttgaaaagttgaaaaactaaggtatgaggaaacaaa 502

                                                                       
Query: 241 atagtattgaatgttgctatgttacaagtgtattttagaagaaaatacaagatgaaaaga 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagtattgaatgttgctatgctacaagtgtattttagaagaaaatacaagatgaaaaga 442

                                                                       
Query: 301 tctgaatcaatgagataaagatgggggtgacaaagtagggaagtgttatgatttcttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgaatcaatgagataaagatgggggtgacaaagtagggaagtgttatgatttcttaaa 382

                                                                       
Query: 361 actgtttattgagtcatattacatctgaacatacagaattctatttctctaattggaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtttattgagtcatattacatctgaacatacagaattctatttctctaattggaagg 322

                                                                       
Query: 421 gtgcttatcacataaaagtacaattcaggatttagctttctcattgcttgaatcattttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcttatcacataaaagtacaattcaggatttagctttctcattgcttgaatcattttt 262

                                                                       
Query: 481 ataattaaattcactgcatttctatcaggtaactcctgattaactgcaagattaacagaa 540
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 261 ataattaaattcactgcatttctatcaggtaattcctgattaactgtaagattaacagaa 202

            
Query: 541 a 541
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)