Query= MSMg01no237_p23.b1 MSMg01no237_p23.b1 CHROMAT_FILE:
MSMg01no237_p23.b1 PHD_FILE: MSMg01no237_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:57 2005
(546 letters)
>mm_chr1_167577567_167578512
Length = 946
Score = 986 bits (510), Expect = 0.0
Identities = 539/552 (97%), Gaps = 6/552 (1%)
Strand = Plus / Plus
Query: 1 catgaaagcatgccctactcttcaactcatcgctacgggagaatctgttttctttcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 catgaaagcatgccctactcttcaactcatcgctacgggagaatctgttttctttcaaac 254
Query: 61 ccttaaagaaatccaaacaaaacaagatctcccctgcctggttctgaaaacctgtcactc 120
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 255 ccttaaagaaatccaaacaaaataagatcttccctgcctggttctgaaaacctgtcactc 314
Query: 121 aagacacagaccagctttgtgcatacatcctgtcctcaaagtctttgagaccttcctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagacacagaccagctttgtgcatacatcctgtcctcaaagtctttgagaccttcctgcc 374
Query: 181 tcggtctccctagtaaagggattacaggcgtgagtcaccaagcttagctgcaggtgatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcggtctccctagtaaagggattacaggcgtgagtcaccaagcttagctgcaggtgatct 434
Query: 241 ttaaacccaaatatcatctctaggcacagtgctgcatgcctttggtcccagcactcagag 300
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttaaagccaaatatcatccctaggcacagtgctgcatgcctttggtcccagcactcagag 494
Query: 301 gcagaggcag------ggggatctctatgagttttgaggcccgcctgatctataaagtat 354
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gcagaggcagaggcagggggatctctatgagttttgaggcccgcctgatctataaagtat 554
Query: 355 tctccaggacagccagaactgtagacagaccctgtctcaacaccccccaaatgtggagtc 414
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 555 tctccaggacagccagaactgtagacagaccctgtctcaacaacccccaaatgtggagtc 614
Query: 415 ctccctatctaccatagaagcgcagcacttggtcttggttgcttcagaaaggggagcaaa 474
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctccctatctaccatagaagtgcagcacttggtcttggttgcttcagaaaggggagcaaa 674
Query: 475 cattgccaggggaggacaggaaagcatctgccctgtcggaacaccctgccaagaggactc 534
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 675 cattgccaggggaggacaggaaagcatctgccctgttggaacaccctgccaagaggactc 734
Query: 535 ttgggactgaag 546
||||||||||||
Sbjct: 735 ttgggactgaag 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_p23.g1 MSMg01no237_p23.g1 CHROMAT_FILE:
MSMg01no237_p23.g1 PHD_FILE: MSMg01no237_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:57 2005
(637 letters)
>mm_chr1_167724353_167725389
Length = 1037
Score = 1185 bits (613), Expect = 0.0
Identities = 632/639 (98%), Gaps = 2/639 (0%)
Strand = Plus / Minus
Query: 1 agttttgaaaaattcgcattagggcttagcagttaagagcactgattgcccttctagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 agttttgaaaaattcgcattagggcttagcagttaagagcactgattgcccttctagagg 968
Query: 61 acctggggttcaattcccagtacccacttggcaattcacaactgtctgaaactccaagat 120
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 967 acctggggttcaattcccagtacccacatggcaattcacagctgtctgaaactccaagat 908
Query: 121 ctgacacctcatacaggcatgcatgcaggcaaaacatcaatgcgcataaaataaaaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ctgacacctcatacaggcatgcatgcaggcaaaacatcaatgcgcataaaataaaaataa 848
Query: 181 ataatttttaaaaaatcactttagaatctagggctatcattgtactattccttgagagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ataatttttaaaaaatcactttagaatctagggctatcattgtactattccttgagagta 788
Query: 241 ttgaatagtcacccaataaggcttttccaccggatcaaaatatattcctaacatgttctt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttgaatagccacccaataaggcttttccaccggatcaaaatatattcctaacatgttctt 728
Query: 301 ttagtcaattctttggagcaatccctctcaaatatggtttagtttacattttaagtttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttagtcaattctttggagcaatccctctcaaatatggtttagtttacattttaagtttat 668
Query: 361 tttccatgcataagggagtatgagggggagggcgcccctaggaatgcaactgcaactgag 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tttccatgcataagggagtctgagggggagggcgcccctaggaatgcaactgcaactgag 608
Query: 421 atgtgtctttcccaaggagaactccccaaacagttacatttattaagactaaaatggaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atgtgtctttcccaaggagaactccccaaacagttacatttattaagactaaaatggaaa 548
Query: 481 atatgggtttaccaggtttgggaaaagtgtgaactcagatctataataatgccagagatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atatgggtttaccaggtttgggaaaagtgtgaactcagatctataataatgccagagatg 488
Query: 541 aacagagttccattctaaacaagcccggatttcctactcagcagaaaactgtatgccaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aacagagttccattctaaacaagcccggatttcctactcagcagaaaactgtatgccaaa 428
Query: 601 caaagatattcagtgtcaaaacgatttttttt--aactt 637
||||||||||||||||||||| |||||||||| |||||
Sbjct: 427 caaagatattcagtgtcaaaatgattttttttttaactt 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
