BAC Information

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BAC

Clone NameMSMg01-260E03
Chromosome1 (Build37)
Map Location 79,029,165 - 79,029,489
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E03.T7 (MSMg01no260_e03.b1)MSMg01-260E03.TJ (MSMg01no260_e03.g1)
ACCAG402972AG402973
length769742
length of high quality
(start - end)
335 (71 - 405)382 (89 - 470)
definitionCHROMAT_FILE: MSMg01no260_e03.b1 PHD_FILE: MSMg01no260_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:18 2005CHROMAT_FILE: MSMg01no260_e03.g1 PHD_FILE: MSMg01no260_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGTCAGCACGGCCTGGTTGTGAAGGCTGCTCTGAGGGTC
AACCTGAGGAAGTGGTGGCTTATGTTCCTTAGGGGGGATAATGTTCTATA
ACACTAGCCTAGCCCCTTGTCCTGACTGGCTCCTCCAACTCTGATTTATT
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGGTATTT
TCTTCATTTACATTTCCAATGCTATCCCAAAAGTCTTCCATACCCTCCCC
CGCATCCACTCGCCTATCCACCCACTCCCACTTCGTGGCCTTGGTGTTCC
CCTGTACTGAGGCATATGAAGTTTGCAAGACCAATGGGCCTCTCTTTCCT
CTTGTTCCAAAGTCCTGCCCCGCAAAATACCTGTATATGATGTTTCAGGT
TGCATTCCACTGATCTCTGATGAATTTTGAGGGACTGTTTTTTTAAGGTA
ATTACTTCACTTACTTTTTCAAAGCTACCCTTAAATGCCCCCACATGATC
GCCCCCGTCGCGTGTCTGTTGGTGATCTAGGTATAGTTATGAGTGCGTTG
CTGATGCGCCGTTGCCTGCTGCTGGTGGTTCGCATCAGCTTTATTTCGTA
ATGAATGTAGATTACGCTTGGAGTATGCAGTAGTGCCTATTAAGTCCGGG
TTGAGTCGGTATTGTATCACTCTATAATTGAGCTGGAGGAATAGGGTGTT
GATGGGCTCTAACGTTCGG
CTCCTATTCCCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTTTGGAA
ACATCAAAAAGTTGACAGATGTTTTAGCTAAACTGCTAACACTACAGAGG
CAGGGCACACATGAATGCACAGCTGCTCTGTTGCCTGAACAAGATCTGCA
TGGGATCAAGTTGGTTAAAATTCCAGTGTGGATAGGGGAGGGGCTCAGAA
AACTCCACTTCTATATGCTATTGGCAATTGAAGGCTGCTGAGGGAGGAGT
CAGTTTGCTTCAGGGATGTGGTCTCTGGGAGGTTGCTCATGCTACAGTAG
ATGGCCCTACTACACCTTGCACATGCAGGTATCACTAATTGGATCCAGTA
GGATTAAAATAAAAAGAGGACATGAAGTTCGCACAGAAACATGGTAGTAA
TGGAGGAGTGGAGGGGGCCAGTTAAGAGGTAGGCATGATCAGAACACACT
GTGCGTATGCATTAATTTCTCAAAGAACAAGCAAAAGTATATATAAAAAT
AGCATCTTGCCACAAGGAATTACTATTCTTTGCGTGTCCTTACTGGTAAT
TCTTCTTGTACATTCCCAGTTTCATTACTCTAACTTACATACCCACCTTT
CCTAATAAAATTTCCCGCGCACTGTCATCGCTGTTAAGTTCAATACCATA
TATAATCAACTCCTGTCTTCCCTTACCTCCCCTCGATTTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e03.b1 MSMg01no260_e03.b1 CHROMAT_FILE:
MSMg01no260_e03.b1 PHD_FILE: MSMg01no260_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:18 2005
         (335 letters)



>mm_chr1_79029165_79029899
          Length = 735

 Score =  584 bits (302), Expect = e-171
 Identities = 322/334 (96%), Gaps = 9/334 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcctggttgtgaaggctgctctgagggtcaacctgaggaagtggtggcttatgttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcctggttgtgaaggctgctctgagggtcaacctgaggaagtggtggcttatgttcctt 266

                                                                       
Query: 61  aggggggataatgttctataacactagcctagccccttgtcctgactggctcctccaact 120
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 265 aggggggataatgttctataacactagcctagccccttgtcctggctgtctcctccaact 206

                                                                       
Query: 121 ctgatttattattattattattattattattattattattattattattattaggtattt 180
           |||||         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctgat---------ttattattattattattattattattattattattattaggtattt 155

                                                                       
Query: 181 tcttcatttacatttccaatgctatcccaaaagtcttccataccctcccccgcatccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tcttcatttacatttccaatgctatcccaaaagtcttccataccctcccccgcatccact 95

                                                                       
Query: 241 cgcctatccacccactcccacttcgtggccttggtgttcccctgtactgaggcatatgaa 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 94  cgcctatccacccactcccacttcgtggccctggtgttcccctgtactgaggcatatgaa 35

                                             
Query: 301 gtttgcaagaccaatgggcctctctttcctcttg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  gtttgcaagaccaatgggcctctctttcctcttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)