BAC Information

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BAC

Clone NameMSMg01-260M08
Chromosome1 (Build37)
Map Location 3,417,797 - 3,418,186
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260M08.T7 (MSMg01no260_m08.b1)MSMg01-260M08.TJ (MSMg01no260_m08.g1)
ACCAG403344AG403345
length816739
length of high quality
(start - end)
69 (82 - 150)389 (79 - 467)
definitionCHROMAT_FILE: MSMg01no260_m08.b1 PHD_FILE: MSMg01no260_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:58 2005CHROMAT_FILE: MSMg01no260_m08.g1 PHD_FILE: MSMg01no260_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTCTCTCAAAAATTGCGGCCGCTAAACGACTACTANATCGTAAGGAG
GGGGCGGAATTCTCTGGAAAGCAAATAAGACTGGAGAGGGTTTCTCTTCT
CTTCTCTTCTCTTCTCTTCTCTTCTCTCCTCTCCTCTCCTCTCCTCTCCA
CTCCATCTCACTCCTCTCCAATCCTCTCCTAGAGAATGCAAGCGAAGGAG
AGGGGAGAAGGCAGAGAGGGAAAAAATAGATAGGGGGGAATGAATAGAAT
AAAAAAAGAGGAAAAAAGAAGAAAGGAAGAATAAAATGGGGACGAAAGAA
AAGAGAAAAGGGAAAAAAAGGAGGAAAAAAATTTTTTTAGGAAGAAAAGT
GAGAGGAGAATATGAAGAGGAGGGAAGAAAACGGAGGAAATAATAAGAGA
AATAAAGGGGAGGGAAGAAAAAAATCAATTAGTGATCCCCCAACAGAGAG
GGAGGGGGGGGAAAGGGGAGGAAGTATAGTAGAGGGGGAGGGATGGGGAA
CAAGAGAAAAAGTAAATAAGATAGAATGAGAGGGGGGGGGAGGGGAGATA
GTAAAAGGAGAAGGATATTGAAGAGGTAGGAATGAGGGACGGGGAGTAAA
TAGGAGATTATATGGGGGGGGGAGAGGAAGGTAGTAATTGTAGGGAAGGG
GTTGCGGAGGAAAAAAAAAGAGATAAAAAAATGTGAGGAAAAGCGGGTAA
AAAGAAAGAACAAGCGGCAATGGGAAGAGGAATAAAGTGGAGGGAGGAGA
TGAGTAGAAAGGGGGATAATGTAGAGGGGGAGTGAAAGGAAATAGAAGCG
TGAAAGGCAGACACGG
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTAGAATGCAAATGTATA
ATACCTTTAGAGGTATTCCTGTTTCAGCCATGCATATATCAGAAGCTAAT
AGAACACTTGATCAAATCCTACGTGCTAGCTACCTAAAACACAGTATATA
TTGGCATGTTTCCCGGTGGAATAAATAATGAGATCAACCCTAATGGAGAA
AAAAATGAGCCTTACTGTAAGGAAGGTAAATGCCTTGTCCATGATTTTCC
TTCCAAAGATATGGATGATGCAGTGACATTTCAAAGAGGACATTATAAGG
ATCATTTCTCAGTTGCAATGATGAAACATACATGTGTTTTAATCTGTTCT
AATGTCCAAAGGACTTCATTGCCGACGGCAAAACTTTCTCTTTTCCTTCT
TAAATGATGCTCTTTGGTAATTATGTCAAATGAAATTTAACCATAACTAA
CATTGGCGTAAGTCCTCCCTGCAATAGTATGAGTATCTGAAAATATTTTA
CACCTCCATTATTTTGTCTGTCTCCGGCAAGTATTCCCGGTAGAGGTATG
CTTGTTAATCTAACCCTCTAGCATACCACTCCCAAATTGACTATTATCAC
CTTAACATGTTGCCCATTTTCTCTTATCGAATATGATCCAATCGCATCCC
GAGTATCTGTGAGAATCGGGGCATATTTCTTACGAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_m08.g1 MSMg01no260_m08.g1 CHROMAT_FILE:
MSMg01no260_m08.g1 PHD_FILE: MSMg01no260_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:58 2005
         (389 letters)



>mm_chr1_3417597_3418386
          Length = 790

 Score =  681 bits (352), Expect = 0.0
 Identities = 381/392 (97%), Gaps = 5/392 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtattagaatgcaaatgtataatacctttagaggtattcctgtttcagccatgcatata 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agtattagaatgaaaatgtataatacctttagaggtattcctgtttcagccatgcatata 531

                                                                       
Query: 61  tcagaagctaatagaacacttgatcaaatcctacgtgctagctacctaaaacacagtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcagaagctaatagaacacttgatcaaatcctacgtgctagctacctaaaacacagtata 471

                                                                       
Query: 121 tattggcatgtttcccggtggaataaataatgagatcaaccctaatggagaaaaaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tattggcatgtttcccggtggaataaataatgagatcaaccctaatggagaaaaaaatga 411

                                                                       
Query: 181 gccttactgtaaggaaggtaaatgccttgtccatgattttccttccaaagatatggatga 240
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 410 gccttactgtaaggaaggtaaatgccttgtctatgattttccttccaaagatctggatga 351

                                                                       
Query: 241 tgcagtgacatttcaaagaggacattataaggatcatttctcagttgcaatgatgaaaca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgcagtgacattttaaagaggacattataaggatcatttctcagttgcaatgatgaaaca 291

                                                                       
Query: 301 tacatgtgttttaatctgttctaatgtcc-aaaggacttcattgcc--gacggcaaaact 357
           ||||||||||||||||||||||||||||| |||||||||||||  |  || |||||||||
Sbjct: 290 tacatgtgttttaatctgttctaatgtccaaaaggacttcatt--cttgatggcaaaact 233

                                           
Query: 358 ttctcttttccttcttaaatgatgctctttgg 389
           |||||||||||||||||||| |||||||||||
Sbjct: 232 ttctcttttccttcttaaataatgctctttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 790
Length adjustment: 9
Effective length of query: 380
Effective length of database: 781
Effective search space:   296780
Effective search space used:   296780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)