CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGA
ATTCAAGGCCCATATCTCAACATGATAAAAGCAATCTGCAGCAAACTAGT
AGCCAACATCAAGGTAAATGGTGAGAAGCTGGATGCAATCCCACTAAAAT
CAGGGACTAGACAAGCCTGCACACTTTCTCCCTACCTCTTCAACATAGTA
TTTGAAGTCCTAGCCAAAGCAATTGGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTCCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTC
AATGGCCTTTTTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTA
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTTAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAATGCA
ATCTACAGATTCAATGGAATCCTCATCAAAATTCCAACTCAATTCATCAA
CGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAAN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGNAATCATATTTTCTGAGAAGTGGAAGGATGCT
GCTTAGTTATCGCAGTTCCTTTTGAAGCTATTTGAAAACATTTTTATAGA
CTTTCTGATTACAGCATGCATAATGCTGACTACATCTAAGAGACCTGCCT
GAAAAAAAAAAGGCAGTTTTGTTAATATATTAGTTTATTCAAATGCCTCT
ACTAAAAATTGTATTTTAATGGCAATTATATGACTGGCTTTATTCTTGTA
CAATTGGAAATGTAATTGAGACAAATCGCTACAAACGTATTTGTAGTGAA
AATGTCAACTCAGCATTATGTGCCTCTATTTTTCTGCAATATCCAAATCT
ATCGGTAAGTGGAATCATCGGAGTTTCAGGAGCTGGGTGAGGGGCAGAGA
GAGATGGAGAGGAATGCTTTCTGAAAAGATCAACTCCAGACTTAACGTGA
ATCATCAATTTAATGTTTTAAAGATTCATGAGGAAATCAGTGATTCTAAG
AGTGCTTTAGGAAAAATATCTGCTTAAATGATATTAATGGCAAGATGAAT
GCAGCAAGGTGAACCACACTGATAATATTAAATTACCCCAAGAGGTCCGC
AGTCAGAATCCCAGTGCAGAAGTCTGCTTGCCGACTTCCCTTGCTTTCCC
CACTGGTTTACTTAAGGGCCGTCCTTCTTGAAGCTC

Query= MSMg01no261_a20.g1 MSMg01no261_a20.g1 CHROMAT_FILE:
MSMg01no261_a20.g1 PHD_FILE: MSMg01no261_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:21 2005
         (664 letters)



>mm_chr1_41406378_41407440
          Length = 1063

 Score = 1230 bits (636), Expect = 0.0
 Identities = 657/664 (98%), Gaps = 1/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catattttctgagaagtggaaggatgctgcttagttatcgcagttccttttgaagctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catattttctgagaagtggaaggatgctgcttagttatcgcagttccttttgaagctatt 260

                                                                       
Query: 61  tgaaaacatttttatagactttctgattacagcatgcataatgctgactacatctaagag 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaacatttttatggactttctgattacagcatgcataatgctgactacatctaagag 320

                                                                       
Query: 121 acctgcctgaaaaaaaaaaggcagttttgttaatatattagtttattcaaatgcctctac 180
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgcctggaaaaaaaa-ggcagttttgttaatatattagtttattcaaatgcctctac 379

                                                                       
Query: 181 taaaaattgtattttaatggcaattatatgactggctttattcttgtacaattggaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaaaattgtattttaatggcaattatatgactggctttattcttgtacaattggaaatg 439

                                                                       
Query: 241 taattgagacaaatcgctacaaacgtatttgtagtgaaaatgtcaactcagcattatgtg 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taattgagacaaatcactacaaacgtatttgtagtgaaaatgtcaactcagcattatgtg 499

                                                                       
Query: 301 cctctatttttctgcaatatccaaatctatcggtaagtggaatcatcggagtttcaggag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 500 cctctatttttctgcaatatccaaatctatcggtaagtggaatcatcggagtttcacgag 559

                                                                       
Query: 361 ctgggtgaggggcagagagagatggagaggaatgctttctgaaaagatcaactccagact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgggtgaggggcagagagagatggagaggaatgctttctgaaaagatcaactccagact 619

                                                                       
Query: 421 taacgtgaatcatcaatttaatgttttaaagattcatgaggaaatcagtgattctaagag 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taacgtgaatcatcaatttaacgttttaaagattcatgaggaaatcagtgattctaagag 679

                                                                       
Query: 481 tgctttaggaaaaatatctgcttaaatgatattaatggcaagatgaatgcagcaaggtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgctttaggaaaaatatctgcttaaatgatattaatggcaagatgaatgcagcaaggtga 739

                                                                       
Query: 541 accacactgataatattaaattaccccaagaggtccgcagtcagaatcccagtgcagaag 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 740 accacactgataatattaaattaccccaagaggtccgcagtcagaatcccggtgcagaag 799

                                                                       
Query: 601 tctgcttgccgacttcccttgctttccccactggtttacttaagggccgtccttcttgaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tctgcttgccgacttcccttgctttccccactggtttacttaagggccgtccttcttgaa 859

               
Query: 661 gctc 664
           ||||
Sbjct: 860 gctc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space:   688662
Effective search space used:   688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)