NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCAGATTGTATTCTCCCAGTGGTTGTACCAGTTTGCAATCCC
ATCAACTATGGAGGAGTATTCCTCCCTCTCCACATACTTGACACCATATG
CTGTCACATGAGATTTTGATCTTAACCATTCTAATTGGAATAAGGTGGAA
TCTCAAGGTCATTTTGATTTGCATTTCTCTGATCACTAAGGACTTTGAAC
ATTGTTAAGTGCTTCTAAGTCATTTGAGATTCCTCTGTTGTGAATTCTCT
GTTAAGTTCTTTACCCCATTTTTTGATTAGTTTGTTTGGATTCTTGGTGG
TTAGCTTCTTGAGTTCTTTATATGTTTTTGATATTAGCCCTCTATCAGAT
GTTGGGTTAGTGAAGATTTTTTTTCCCAATCTATAGGTTGCTGATTTGTC
CTATTGACAATGTCCTTAGCCTTACAGAACTTTCCAATTTCAAGAGGTTC
CATTTATCAATTCTTGTTCTTAGAGGCTAAGCCATCGGAGTTCTGTTTAC
AAAATATCCCCCTGTGACAATGATTTTGAGGCTCTTTTTAACTTCCTCTT
CTATTAGATTCCGTGCATTTAGTTTTACGCTAACGCCGCTGATCCAAATG
GACTTTTTGTTTTGTGACACAGTGAAAAATATGGATTTGTTTTCATTTTT
TCTATATATAGCACCGCTATTCAAACCATTTCCCAATTTTATTTCATA

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTGAATTTGTGTTGCTTATATCAATA
TGAAAATAATAGATGTCTAATACATCAGTTCTCCATGGTTTATATGATTA
TTGTAGATATAACCTTTATTTTGTAATGTTATTTTCCTAGTTATTAATAG
TTTCCAATAATATTTGATATATCATTGCTTTATATTTAATTAACTAGGTC
TTATATTAATAAGAACTACTACATTTAAATACATCCTCTCCATTGTTTCT
TGTTCTTTTAATTATTATTGTTTAACAAATAGAAACTTCTTAGTCCAATT
TGTTACTTTTCTACAATATTTTCAGTACTGACCTATTCCTATTGGATAGC
TAGTCTGTGACCCATGGCTGGAGAAGAGTGATTCTCCTTTACCATTATTC
CTTATTTATCTATACCTCTTTATTCAGGAGTAGAACTGTGTGAGATTTCC
TGTATCCATATATGTATGTAATGTAGTGTAGTTTTCTCTAGGTTAAATCT
ACACTTGCATTTTGGAGAGAAACTCATTGAGACACTGGATTTCAAGGAAA
GGTTAAATGATAGTTTATTTAGCAGGTTTACAAAGAAGTTAAATAATAGG
ATGTTCTGAGGCGGAAAAAATCATTCTACATCCTGCAGGTAAGCTTTATT
AATACTGGTAAATAACAACTCATAATATCTTG

Query= MSMg01no261_c04.g1 MSMg01no261_c04.g1 CHROMAT_FILE:
MSMg01no261_c04.g1 PHD_FILE: MSMg01no261_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:27 2005
         (550 letters)



>mm_chr1_49987746_49988697
          Length = 952

 Score = 1033 bits (534), Expect = 0.0
 Identities = 547/552 (99%), Gaps = 2/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgaatttgtgttgcttatatcaatatgaaaataatagatgtctaatacatcagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 752 agttgaatttgtgttgcttatatcaatatgaaaataatagatgtctaatgcatcagttct 693

                                                                       
Query: 61  ccatggtttatatgattattgtagatataacctttattttgta--atgttattttcctag 118
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 692 ccatggtttatatgattattgtagatataacctttattttgtaatatgttattttcctag 633

                                                                       
Query: 119 ttattaatagtttccaataatatttgatatatcattgctttatatttaattaactaggtc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttattaatagtttccaataatatttgatatatcattgctttatatttaattaactaggtc 573

                                                                       
Query: 179 ttatattaataagaactactacatttaaatacatcctctccattgtttcttgttctttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttatattaataagaactactacatttaaatacatcctctccattgtttcttgttctttta 513

                                                                       
Query: 239 attattattgtttaacaaatagaaacttcttagtccaatttgttacttttctacaatatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attattattgtttaacaaatagaaacttcttagtccaatttgttacttttctacaatatt 453

                                                                       
Query: 299 ttcagtactgacctattcctattggatagctagtctgtgacccatggctggagaagagtg 358
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 452 ttcagtactgacctattcctattggatagctagtctgtgacccatgcctggagaagagtg 393

                                                                       
Query: 359 attctcctttaccattattccttatttatctatacctctttattcaggagtagaactgtg 418
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 attctcctttaccattattccttatttgtctatacctctttattcaggagtagaactgtg 333

                                                                       
Query: 419 tgagatttcctgtatccatatatgtatgtaatgtagtgtagttttctctaggttaaatct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgagatttcctgtatccatatatgtatgtaatgtagtgtagttttctctaggttaaatct 273

                                                                       
Query: 479 acacttgcattttggagagaaactcattgagacactggatttcaaggaaaggttaaatga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acacttgcattttggagagaaactcattgagacactggatttcaaggaaaggttaaatga 213

                       
Query: 539 tagtttatttag 550
           ||||||||||||
Sbjct: 212 tagtttatttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space:   508680
Effective search space used:   508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)