Query= MSMg01no261_c11.b1 MSMg01no261_c11.b1 CHROMAT_FILE:
MSMg01no261_c11.b1 PHD_FILE: MSMg01no261_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:28 2005
(626 letters)
>mm_chr1_169888947_169889972
Length = 1026
Score = 955 bits (494), Expect = 0.0
Identities = 577/634 (91%), Gaps = 47/634 (7%)
Strand = Plus / Plus
Query: 1 gtagattagtagaagccacagttcttactggcttgaagctcttcagacttactggaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gtagattagtagaagccacagttcttactggcttgaagctcttcagacttactggaaatt 291
Query: 61 ttatttgtgtatttaaaatttttacttgttttttttttt--------ggcaatttcatac 112
|| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 292 ttgtttgtgtatttaaaatttttacttgtttttttttttttttttttggcaatttcatac 351
Query: 113 agtcagctttgtgtcaacttgatacaagtttgatggagacatatggggagaaggaacctc 172
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agtcagctttgtgtcaacctgatacaagtttgatggagacatatggggagaaggaacctc 411
Query: 173 atttgagaaaatgtcctcaccagattagcctatgggcaagcttgtggtacattttcttga 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 412 atttgagaaaatgtcctcaccagattagcctatgggcaagcttgtggtacattttcttaa 471
Query: 233 ttgatgatcagtgtaagacggccagctcactgtgggtggtgtcactcctagagtggtgat 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgatgatcagtgtaagacggccagctcactgtgggtggtgtcactcctagagtggtgat 531
Query: 293 cttgggtgttataagaaagcaggctgagcaagccatgagaagaaattcagtaagcaacat 352
||||||||| ||| |||||||||
Sbjct: 532 cttgggtgt----------------------------------aat-----aagcaacat 552
Query: 353 ttctccatggtttcttcccttgttcctgcctctaggttcctgctctgacttttttggaag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 553 ttctccatggtttcttcccttgttcctgcctctaggttcctgctctgacttttctggaag 612
Query: 413 aagaacatagaagctataaactgaaatacacccttaccttcccaagttgcttttggcctt 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 613 aagaacatagaagctataaactgaaatacacccttaccttcccaagttgcttttggccat 672
Query: 473 tgtgttttatcacacaacaggcaaactaaggcatatagatcaagtttagtttgcatatat 532
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 673 tgtgttttatcacacaataggcaaactaaggcatatagataaagtttagtttgcatatat 732
Query: 533 actctccagacccgactccaaatctttttggacctcatatctccgcctagcttcatgata 592
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 733 actctccagacctgactccaaatctttttggaccccatatctccgcctagcttcatgata 792
Query: 593 cacttcccatcctcttcccaccaccccttttata 626
||||||||||||||||||||||||||||||||||
Sbjct: 793 cacttcccatcctcttcccaccaccccttttata 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_c11.g1 MSMg01no261_c11.g1 CHROMAT_FILE:
MSMg01no261_c11.g1 PHD_FILE: MSMg01no261_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:28 2005
(533 letters)
>mm_chr1_170050208_170051140
Length = 933
Score = 1000 bits (517), Expect = 0.0
Identities = 529/533 (99%)
Strand = Plus / Minus
Query: 1 ctatcctctaataaataatgaaaattgagagtccgaaatatttagtaccttgcccatggc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 866 ctatcctctaataaataatgaaaattgagagtccgaaatatttagtaacttgcccatggc 807
Query: 61 cacatagataaaaaaaacctagagcctattttcaggcttagatgtacctaactaactcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cacatagataaaaaaaacctagagcctattttcaggcttagatgtacctaactaactcca 747
Query: 121 tagtctatgctttgttactaacccagacctgccagtgagagaagtcagagctcaaagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tagtctatgctttgttactaacccagacctgccagtgagagaagtcagagctcaaagaca 687
Query: 181 tcatttagtgcagctaagccaagacaaaactctaaaatgtttatcagcaaaatttgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcatttagtgcagctaagccaagacaaaactctaaaatgtttatcagcaaaatttgtttt 627
Query: 241 atctggcccattgattggtttggaaactagttctagccagaagataaatgcctagctact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atctggcccattgattggtttggaaactagttctagccagaagataaatgcctagctact 567
Query: 301 acagacagaaatgagggactataagtgaccacatggtagtctcaccgctgccaccattta 360
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 566 acagacagaaatgagggactataaatgaccacatggtagtctcagtgctgccaccattta 507
Query: 361 tgtgtgttcatctgagcaagttgcttccctcttctaggatcttgtgccatctttggtgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtgtgttcatctgagcaagttgcttccctcttctaggatcttgtgccatctttggtgac 447
Query: 421 atagggcatttcccccttgtctaatgtcacactctgtcactaggcatctctatggtaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atagggcatttcccccttgtctaatgtcacactctgtcactaggcatctctatggtaata 387
Query: 481 acaaggtctacaataaagcaggcccaagtttgaatcctggctccatcctcaag 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaggtctacaataaagcaggcccaagtttgaatcctggctccatcctcaag 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
