Query= MSMg01no261_c23.b1 MSMg01no261_c23.b1 CHROMAT_FILE:
MSMg01no261_c23.b1 PHD_FILE: MSMg01no261_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:31 2005
(320 letters)
>mm_chr1_30972532_30973251
Length = 720
Score = 574 bits (297), Expect = e-168
Identities = 314/320 (98%)
Strand = Plus / Minus
Query: 1 gcagtgcttttaactgctgagccacctctccagccctcttgaggtattttaatggcaaca 60
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 563 gcagtgcttttaactgctgagccacctctccagccctcttgctgtatttaaatggcaaca 504
Query: 61 atttatagttaattcatatatcaatgtgtgtacatcttgccattttgtgatcttagtaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atttatagttaattcatatatcaatgtgtgtacatcttgccattttgtgatcttagtaac 444
Query: 121 tgttttgatcatattgctcttattatctgaatgcagatattgaagcattccttttgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgttttgatcatattgctcttattatctgaatgcagatattgaagcattccttttgtaaa 384
Query: 181 attcaaaatgttgtcttcaaatctgattattttaaactaataaattttactaaatgttct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 attcaaaatgttgtcttcaaatctgattattttaaactaataaattttactaaatgctct 324
Query: 241 ctgcgggtctagaaaataatcagatgttttcttccaaatgntttgctcacatgatgaatg 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 ctgcgggtctagaaaataatcagatgttttcttccaaatgctttgctcacatgatgaatg 264
Query: 301 acatacaattcttttattac 320
||||| ||||||||||||||
Sbjct: 263 acatagaattcttttattac 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_c23.g1 MSMg01no261_c23.g1 CHROMAT_FILE:
MSMg01no261_c23.g1 PHD_FILE: MSMg01no261_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:31 2005
(672 letters)
>mm_chr1_30824569_30825640
Length = 1072
Score = 1154 bits (597), Expect = 0.0
Identities = 649/669 (97%), Gaps = 6/669 (0%)
Strand = Plus / Plus
Query: 8 tcagcagtcaaaaggaaatttgtaatcttaaccaactccttagatattgatcacttcctg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcagcagtcaaaaggaaatttgtaatcttaaccaactccttagatattgatcacttcctg 265
Query: 68 gcttaactagaaccctccatgcttcaaagaaataaaccattaatgctctatttctggcat 127
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcttaactagaaccctccacgcttcaaagaaataaaccattaatgctctatttctggcat 325
Query: 128 atagctaatagtatccaattgtgtagatacatgatgagaaacagtgtgttataaattttc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atagctaatagtatccaattgtgtagatacatgatgagaaacagtgtgttataaattttc 385
Query: 188 attctggtctatgactcagaaccagacaggaaagcagagccagctggactcctgggtttc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attctggtctatgactcagaaccagacaggaaagcagagccagctggactcctgggtttc 445
Query: 248 ctcttggtgagtattgccttcatcttagttctgggctgaatggtgatgacttgctggtgg 307
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 446 ctcttggtgagtattcccttcatcttagttctggactgaatggtgatgacttgctggtgg 505
Query: 308 cagaccttaacagcagtgttgtttacagttataaccttggatatggcaaagcaagtatca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cagaccttaacagcagtgttgtttacagttataaccttggatatggcaaagcaagtatca 565
Query: 368 agaacaggtctcaacc----ccagagaatccacagtgtcctagggagggtcctgcaaatg 423
|||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct: 566 agaacaggtctcaacctgttcttga--atccacagtgtcctagggagggtcctgcaaatg 623
Query: 424 cattggctgagagtgaagcggcatctcatcatcgaccctgtgcagtgttctcatggcttt 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 cattggctgagagtgaagtggcatctcatcatcgaccctgtgcagtgttctcatgacttt 683
Query: 484 gcctacgaacctaactaatgagagaacctaagtaatgagagagtgaagaacgaacagaca 543
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 gcctatgaacctaactaatgagagaacctaagtaataagagagtgaagaacgaacagaca 743
Query: 544 cacaaacacatgtacagtgactctgtcactaggtgggccttgcaccaccacctcagccca 603
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 744 cacaaacacatgtacagtgactctttcactaggtgggccttgcaccaccccctcagccca 803
Query: 604 cgtgttatgtgcagcataaggaggaggttagctcatctcagtagaaggtctctgtagggg 663
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtgttatgtgtagcatgaggaggaggttagctcatctcagtagaaggtctctgtagggg 863
Query: 664 agcagtctt 672
|||||||||
Sbjct: 864 agcagtctt 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
