BAC Information

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BAC

Clone NameMSMg01-261D09
Chromosome1 (Build37)
Map Location 19,260,238 - 19,260,733
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b
Downstream geneLOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261D09.T7 (MSMg01no261_d09.b1)MSMg01-261D09.TJ (MSMg01no261_d09.g1)
ACCAG403663AG403664
length722713
length of high quality
(start - end)
276 (383 - 658)496 (79 - 574)
definitionCHROMAT_FILE: MSMg01no261_d09.b1 PHD_FILE: MSMg01no261_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:33 2005CHROMAT_FILE: MSMg01no261_d09.g1 PHD_FILE: MSMg01no261_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCAGTTTTATCTACTTGTACAAAGCTCGAGTCTAAGTGGAT
CAAATAACTCCACATATAACCAGACACACTAAAACTTATAGAGGAAAAAG
TGGGGAAAAGCCTCGAAGATATGGGCACAGAGGAAAAATTCCTGAACAGA
ACAGCAATGGCTTGTGCTGTAAGATCTAGAAACAACAAATGGGACCTCAT
AAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGAGAAAAG
GGCCACCAGCAGATTGAGAAAGGATCTTTACAATCCTAAATCAGACATGG
GACTCATATCCTATATATACCAAGATCTCACGGAGCTGGACTCCAGAAAA
ATCAAATAACCCCATTTTAAAAAATGGGGTACAGAACTAAACAAAGAATT
CTCAACTGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAAAAAATGTT
CAACATACTTAATCATCAGGGAAATGCACATCAAAACAACCCTGAGATTC
CATCTCACACCAGTCAGAATGGCTAAGATCAAAACTTTAGGGGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGG
ATTGCAAGCTTCTAGAATCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AGATTGGATATAGTAATGCCAG
NTTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATACCTTGTTATGTCCTG
CTGGAGCTGGCTACGTGCCTTTTTGGCACCCTTCTTGAGGGCAAGGTGTG
GGAAGTAAGTGGAAGGAATCATGGTTCTTACAGCTGGGGAACATCTGGAT
GAAACAAAATGTGCCCCACAAAGCTCAAGAAGTATCGAACGCTGAAATAG
CCAGTTGAAGTAATTGTTTTTTGTTTTGTCTTGTTTTGTTTTTCAGACCT
GTGAGATGCAGGGAAAATCTAAACCTTTTCAATTCTGTTCTGTGGTTAGG
GTACCCAGACCTCAACTCCTTCAACCTGTTGTGCTGTCTGAGGTAGGCTA
AGTAAATGGCAGAGCTTGTGAAGAAGTTTAGATGAAGGTTATTGTGGATG
CTTCTGTCTTAGGGAGTTTGAGTTCAGGAGAGAGACTCAAAATGAGAACA
GAGGGGAGAAAAGGATAAAGCAGAGAAACATCATTGATTTATTGACGCTG
GGGTGGCTGAGGATTGATCATGTTTGGACTCTTTTTCTTTTCCTTCCCTT
TCCCCCTTTCTTTCTCTCTTTCTTTTCACTCTCTCTTCTTCCTTCCTTTC
TTCCTTCCTTCCTTTCTTTCCTTTCCTTCTTTCCTTCCTTACCTTCTTTT
CTTTCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_d09.g1 MSMg01no261_d09.g1 CHROMAT_FILE:
MSMg01no261_d09.g1 PHD_FILE: MSMg01no261_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:33 2005
         (496 letters)



>mm_chr1_19260038_19260933
          Length = 896

 Score =  913 bits (472), Expect = 0.0
 Identities = 490/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttataccttgttatgtcctgctggagctggctacgtgcctttttggcacccttcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttataccttgttatgtcctgctggagctggctacgtgcctttttggcacccttcttga 260

                                                                       
Query: 61  gggcaaggtgtgggaagtaagtggaaggaatcatggttcttacagctggggaacatctgg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcaaggtgtgggaagcaagtggaaggaatcatggttcttacagctggggaacatctgg 320

                                                                       
Query: 121 atgaaacaaaatgtgccccacaaagctcaagaagtatcgaacgctgaaatagccagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaacaaaatgtgccccacaaagctcaagaagtatcgaacgctgaaatagccagttga 380

                                                                       
Query: 181 agtaattgttttttgttttgtcttgttttgtttttcagacctgtgagatgcagggaaaat 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaactgttttttgttttgtcttgttttgtttttcagacctgtgagatgcagggaaaat 440

                                                                       
Query: 241 ctaaaccttttcaattctgttctgtggttagggtacccagacctcaactccttcaacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaaccttttcaattctgttctgtggttagggtacccagacctcaactccttcaacctg 500

                                                                       
Query: 301 ttgtgctgtctgaggtaggctaagtaaatggcagagcttgtgaagaagtttagatgaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ttgtgctgtctgaggtaggctaagtaaatggcagagcttgtgaagaagtctagatgaagg 560

                                                                       
Query: 361 ttattgtggatgcttctgtcttagggagtttgagttcaggagagagactcaaaatgagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattgtggatgcttctgtcttagggagtttgagttcaggagagagactcaaaatgagaa 620

                                                                       
Query: 421 cagaggggagaaaaggataaagcagagaaacatcattgatttattgacgctggggtggct 480
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 cagaggggaaaaaaggataaagcagagatacatcattgatttattgacgctggggtggct 680

                           
Query: 481 gaggattgatcatgtt 496
           |||| |||||||||||
Sbjct: 681 gaggtttgatcatgtt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)