Query= MSMg01no261_d19.b1 MSMg01no261_d19.b1 CHROMAT_FILE:
MSMg01no261_d19.b1 PHD_FILE: MSMg01no261_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:34 2005
(665 letters)
>mm_chr1_178760414_178761478
Length = 1065
Score = 1230 bits (636), Expect = 0.0
Identities = 649/656 (98%), Gaps = 7/656 (1%)
Strand = Plus / Minus
Query: 13 ggaattcaacatgaaat---tttctatggaagatttacaccatcaaattcctgatgtaca 69
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggaattcaacatgaaataaat---tatggaagatttacaccatcaaattcctgatgtaca 655
Query: 70 acaaatatattaaggtaagaaaggaaacccagctctaggaaatatctagtatttgggtta 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acaaatatattaaggtaagaaaggaaacccagctctaggaaatatctagtatttgggtta 595
Query: 130 cttaagggatagttgacgtctgctggtagccataccacaaggtgttattattttgtttct 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cttaagggatagttgacgtctgctggtagccataccacaaggtgttattattttgtttct 535
Query: 190 acaaggaatcaaagaaaagtcttagttaaaatggttatctaagagatttttcaaaatgag 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acaaggaatcaaagaaaagtcttagttaaaatggttatctaagagatttttcaaaatgag 475
Query: 250 gcaatctgttgaaaattaagtaaagtactacctaccaatgattaaatgtcaataacatat 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gcaatctgttgaaaattaagtaaagtactacctaccaatgattaaatgtcaataacatat 415
Query: 310 gaggactaaatggagggagagagccaaggcatagaaatatgcagtatttatcaactggta 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaggactaaatggagggagagagccaaggcatagaaatatgcagtatttatcaactggta 355
Query: 370 cccagaagaagtacaaatgaagcagactggaataaagtttgagcacttttatttatatat 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cccagaagaagtacaaatgaagcagactggaataaagtttgagcacttttatttatatat 295
Query: 430 tatcactggcctagcatcatgtaatataagcaactgaggaagtcacaacttgaatagcta 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tatcactggcctagcatcatgtaatataagcaactgaggaagtcacaacttgaatagcta 235
Query: 490 ctgagtggtaacttactttctgaaaacaaaacaaaacaaaacaaaaaaaaaactcaaaaa 549
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 234 ctgagtggtaacttactttctgaaaacaaaacaaaacaaaac-aaaaaaaaactcaaaaa 176
Query: 550 tacagatatatgtatgctactattcattgctactacagtcaaaagctattgtgtaatatg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tacagatatatgtatgctactattcattgctactacagtcaaaagctattgtgtaatatg 116
Query: 610 cagattccttttgcctaccttaggaaaaaaactgtaattaaatgttgtgactgaaa 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cagattccttttgcctaccttaggaaaaaaactgtaattaaatgttgtgactgaaa 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_d19.g1 MSMg01no261_d19.g1 CHROMAT_FILE:
MSMg01no261_d19.g1 PHD_FILE: MSMg01no261_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:35 2005
(647 letters)
>mm_chr1_178637768_178638814
Length = 1047
Score = 1243 bits (643), Expect = 0.0
Identities = 646/647 (99%)
Strand = Plus / Plus
Query: 1 attaggagaatatttagtatctgatgggattgatgggaagtctagagagctagacttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaggagaatatttagtatctgatgggattgatgggaagtctagagagctagacttgga 260
Query: 61 aaatataaatccaagagtaagagaagtgccccagaaggtcatggcacatgagcaaccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatataaatccaagagtaagagaagtgccccagaaggtcatggcacatgagcaaccagt 320
Query: 121 ttaggggatggctattaccagtggtcctgtaccaagctgcccactgcattttgagttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggggatggctattaccagtggtcctgtaccaagctgcccactgcattttgagttcat 380
Query: 181 cctgctggatccagcctaggatctgtacccatgcctttcctctgttccaggcttctttat 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagctggatccagcctaggatctgtacccatgcctttcctctgttccaggcttctttat 440
Query: 241 gccctctgagtgacctggacaatttggaaagcaaagcctggaattcttacaaaatgagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccctctgagtgacctggacaatttggaaagcaaagcctggaattcttacaaaatgagaa 500
Query: 301 ggttgaccttattcttctcaattccttctcattgtgcttctggcctcgggtagaaatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttgaccttattcttctcaattccttctcattgtgcttctggcctcgggtagaaatata 560
Query: 361 ccagtcaacggcacctagggacggcaaatcagattatctcaaggtttttcagttcataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtcaacggcacctagggacggcaaatcagattatctcaaggtttttcagttcataga 620
Query: 421 cactgaaatttgagtcagaatcaaggtgagccaaacacacaaatttcttctaactgtagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactgaaatttgagtcagaatcaaggtgagccaaacacacaaatttcttctaactgtagt 680
Query: 481 tctttgaactttgtgggttacccactttattcattccagggaggtttggggaatattgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttgaactttgtgggttacccactttattcattccagggaggtttggggaatattgta 740
Query: 541 ttatcactctgctctgttagctatttcaacactctaaccatagcaccttagggaaggaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatcactctgctctgttagctatttcaacactctaaccatagcaccttagggaaggaca 800
Query: 601 ggtttattttagctcacaggttgagggtacagactactatggagtga 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtttattttagctcacaggttgagggtacagactactatggagtga 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
