BAC Information

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BAC

Clone NameMSMg01-261H11
Chromosome1 (Build37)
Map Location 160,372,696 - 160,372,986
singlet/doubletsinglet
Overlap geneAstn1
Upstream geneBC026585, Lztr2, LOC664935, LOC100039217, 6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261H11.T7 (MSMg01no261_h11.b1)MSMg01-261H11.TJ (MSMg01no261_h11.g1)
ACCAG403845AG403846
length761718
length of high quality
(start - end)
293 (70 - 362)575 (74 - 648)
definitionCHROMAT_FILE: MSMg01no261_h11.b1 PHD_FILE: MSMg01no261_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:52 2005CHROMAT_FILE: MSMg01no261_h11.g1 PHD_FILE: MSMg01no261_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATATGTCTCGCAGAGTGCATTGCTGAGGCTAGCTAGCTATTCA
TAGTCAGCATCTCAGGTACGGACCCTGGCTTCAGGTCCCAAGAGCGCTGC
TGAAAGATGAGTTCCTCCTGTAGTTGTGTCTGCTGAGCAACTGGCTAGGG
AGTGTGAGAATGGAGGATTTTTGTTTCAGTGTGGTAGCACAGGGAGGATA
ATGTCTATGTAAATCACTTCTCCATCCTGAGTTCTTCATGAACAATGGTA
CTAGACTAAGTAAAGGTCTTTACTTATTATATTAGTCAAAATTATGCATC
ATATTTTCACTTTTCTGGCCCCCCCCCCCCCCCCAAGCAATTTATGGAGG
AAGGGTTTATGTTGGGTTGGAGGCTCATGAAGGAGAGAGGGTAGTGGGAG
GGCCTGATCTCACTTTATCACTGCTAGGGAACAGACAAAGGTGAGCGCTA
TTGCTTCCCAAATCCTCTCTCCTTCCCCTGCTTGTTCACTCTGGACTATA
TCCTTATCACATGGTGCCACACCACTCTTGGTTGATTCTCCCTAACCTTC
TTATATTCTTCTCTGGTACCCTCCTTTTTATTACTTTCCCCATTGCCCCT
TCCCATCTTTACCTTTCCCATTTTATTTTTTTCCCCCTTTCCCCAATTTT
TATTTTCTCCCTACTTTTATCCCCTCCTCAGACTTCTCTTCTTCTACTAC
TCTTATATCCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTTCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAATATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
TGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTTCTA
AACACATGTAACTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_h11.b1 MSMg01no261_h11.b1 CHROMAT_FILE:
MSMg01no261_h11.b1 PHD_FILE: MSMg01no261_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:52 2005
         (293 letters)



>mm_chr1_160372496_160373188
          Length = 693

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtgcattgctgaggctagctagctattcatagtcagcatctcaggtacggaccctggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gagtgcattgctgaggctagctagctattcatagtcagcatctcaggtacggacactggc 260

                                                                       
Query: 61  ttcaggtcccaagagcgctgctgaaagatgagttcctcctgtagttgtgtctgctgagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaggtcccaagagcgctgctgaaagatgagttcctcctgtagttgtgtctgctgagca 320

                                                                       
Query: 121 actggctagggagtgtgagaatggaggatttttgtttcagtgtggtagcacagggaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggctagggagtgtgagaatggaggatttttgtttcagtgtggtagcacagggaggat 380

                                                                       
Query: 181 aatgtctatgtaaatcacttctccatcctgagttcttcatgaacaatggtactagactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctatgtaaatcacttctccatcctgagttcttcatgaacaatggtactagactaa 440

                                                              
Query: 241 gtaaaggtctttacttattatattagtcaaaattatgcatcatattttcac 291
           |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaaggtctttacatattatattagtcaaaattatgcatcatattttcac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)