CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN

TTCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACTTGGGAAGCTGAGG
CAGGAGTTTGAGGTCTGCCTGGGCTTCATAGCTGGATCTTGTTGAAGTTA
CACATGAGAAGGAAAATTAGGGCATATGATACAAATTTATCATTAGAAAT
GAACAAAATAGGGGACTCGGCAAATGATACTTTCTAAACAAAATATGTTT
AAGAAAAATGATTAATAAAATCATGATGGCTGGTTAGCAACCTTTTTGTC
TGGACCTTGATTTCCTCAAGAATATACTTAGGGGATTGGTTAAATAGTTT
TTCTGTTGTGTCAGCTGTAACATCCTATCTTCCATGATTGGTCATTCCTG
TATCCCCACAAGCATGATGCATCTCACAGCCGTTTGGAATGCTTGGTCCC
AGGCACGCATATTTGAGGCACTAGCTTTGGACACAGTACAGGACTACACA
ATGTGGGAAATATCTAGGGGTAAAGACAGGGCTATTATGAGGAGACTTAG
AGTCAGAGCACAAGGGGATAAGACAGAAGTTTCCCTGAATTGATATTTAA
AATATCTGGTTGTTACTTTTTTCCAGACTGTTTCATTCAAAGGTGTACTT
TGTATGTCCTCGTATGTTTGGTTACTATCACCTGGCTAGCTTCCTTTCTT
CTGACATTGGCTGGCACAGGAAG

Query= MSMg01no261_i01.g1 MSMg01no261_i01.g1 CHROMAT_FILE:
MSMg01no261_i01.g1 PHD_FILE: MSMg01no261_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:54 2005
         (621 letters)



>mm_chr1_47062536_47063556
          Length = 1021

 Score = 1027 bits (531), Expect = 0.0
 Identities = 597/619 (96%), Gaps = 3/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacttgggaagctgaggcaggagtttgaggtctgcctgggcttcatagctggatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagaacttgggaagctgaggcaggagtttgaggtctgcctgggcttcatagctggatctt 259

                                                                       
Query: 61  gttgaagtt-acacatgagaaggaaaattagggcatatgatacaaatttatcattagaaa 119
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttgaagttaacacatgaaaaggaaaattagggcatatgatacaaatttatcattagaaa 319

                                                                       
Query: 120 tgaacaaaataggggac-tcggcaaatgatactttctaaacaaaatatgtttaagaaaaa 178
           ||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 tgaacaaaataggagacat-ggcaaatgatactttctaaacaaaatctgtttaagaaaaa 378

                                                                       
Query: 179 tgattaataaaatcatgatggctggttagcaacctttttgtctggaccttgatttcctca 238
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgattaataaaatcatgatggcttgttagcaacctttttgtctggaccttgatttcctca 438

                                                                       
Query: 239 agaatatacttaggggattggttaaatagtttttctgttgtgtcagctgtaacatcctat 298
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 439 agaatatacttaggggattggttaaatcgtttttctgctgtgtcagctgtaacatcctat 498

                                                                       
Query: 299 cttccatgattggtcattcctgtatccccacaagcatgatgcatctcacagccgtttgga 358
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 499 cttccatgattggtcattcctgtatccccacaagcatgatgcttctcacagctgtttgga 558

                                                                       
Query: 359 atgcttggtcccaggcacgcatatttgaggcactagctttggacacagtacaggactaca 418
           |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 559 atgcttggccccaggcaagcatatttgagacactatctttggacacagtacaggactaca 618

                                                                       
Query: 419 caatgtgggaaatatctaggggtaaagacagggctattatgaggagacttagagtcagag 478
           ||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caatgtgggtaacatccaagggtaaagacagggctattatgaggagacttagagtcagag 678

                                                                       
Query: 479 cacaaggggataagacagaagtttccctgaattgatatttaaaatatctggttgttactt 538
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 cacaaggtgataagacagaagtttccctaaattgatatttaaaatatctggttgttactt 738

                                                                       
Query: 539 ttttccagactgtttcattcaaaggtgtactttgtatgtcctcgtatgtttggttactat 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 ttttccagactgtttcattcaaaggtgtactttgtatgtcctcgtatgtttggttattat 798

                              
Query: 599 cacctggctagcttccttt 617
           |||||||||||||||||||
Sbjct: 799 cacctggctagcttccttt 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)