TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTTTAGAGTATACTGGCAAAAAAAATCTGTGTATTTAAGGTAAAGGT
GTAGTTCATATTTATATATACATGCTCATGGACAATGATTGGAGTGCAGG
AATGCAAAACCTGGAGATATACAGAGCTGACTATAGTTGCCTTTGAAGTT
ACATTGCTACATTCTTGAAGTATAGTTCTTCTGGTATCAGTGAATGGAGT
GACTTTGATTTAGAGTGTAAGTGGACTGCCCACTGCAGGGACCCTTCCGT
CTCCAGGTTTAGCTTCCTATTGGCCTCAGGAGAGAACTGTTTTCCCTATA
GTATGTACCTAATTTTTGGGAAGTGGTTGTTTAGGTATGCAAATTCTAAA
CCTAATTAGCTGTTATTTCTTTTCAGCTCAAATCCTAATGGCCTTGGATG
TCTAAGACCTTGGATGTCACTTTGCTAGGTAAGAAAGGCTAGAGTGAGTT
GGCACAGAGGAGGGGACACTGCCTTTGGCCACTGGCTGCTCTCCAAAACA
GGTGAACTTTGTGTTTGAAAGGAATGCATTTAATCATTTGGGCCTAATAG
AAGTTACTTGTATTTTCTCTCCTTTTTGCCCCTCCTGTCTCTCCTTTACC
CCCCCCCCTTGCTGCTTCCTCAACCACCAAAGAATTTAATCTGCTGCACA
ACAAACAATACAGTTATAAAACTTTGACAACAAGAGGGTGTAGCCTCTCC
AAN

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATTTCTAGAATCTAGGTAAAAAGCTG
CAGCCAATTTACCTGTAATCCTAGCGCAAGAGAGCCTGACACAGGCAGAT
GGAACTTACTGACCATCCAGTTTAGATAACCTGCAAGTTTAAGGGTCAGA
GAAAGGCTTTGCCTCGAATAAGGGGGTGGAAAGCTGGCAAGAAAGACATT
GATATTAGCTTCTAGTCTCCACACATCTTCATGTACACGTGCAAACCACA
TAAAACACACACACACACACACACTCACACACGCACACACACACACACAC
ATGCACACACACACACCTCCTACTCCCAAAGATCTTTTTCAAATTAAAGA
AAGAGACATGGAAACTAAATATATAACACTGAAGTGTGGATAGTTTTGTT
ATTCTTATCATGCCGTAACAAAGATTATTGAGATATTCATCAAAACTTGA
AGACAGTAAAAAATTATGAAAAACTACCTTACCAATATTAGTGTCTTGTA
ATTGATCATTTTACTATAGTTATATTGTCCTTATTTTTAGGAAATACACA
TTAAAATACTTAAAGAAGAGATAAATGTCTGTAATTTATTTAAAAAGTCA
GAAATAACAATTACATAACACAATTGTATAGTCAAAATATATACTTTTAT
ATATCTTTATAATTATATAGAGATAACATTTCTAAA

Query= MSMg01no261_i19.b1 MSMg01no261_i19.b1 CHROMAT_FILE:
MSMg01no261_i19.b1 PHD_FILE: MSMg01no261_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:58 2005
         (679 letters)



>mm_chr1_196857523_196858605
          Length = 1083

 Score = 1286 bits (665), Expect = 0.0
 Identities = 677/683 (99%), Gaps = 4/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaaaaaaatctgtgtatttaaggtaaaggtgtagttcatatttatatatacatgctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaaaaaaatctgtgtatttaaggtaaaggtgtagttcatatttatatatacatgctca 260

                                                                       
Query: 61  tggacaatgattggagtgcaggaatgcaaaacctggagatatacagagctgactatagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggacaatgattggagtgcaggaatgcaaaacctggagatatacagagctgactatagtt 320

                                                                       
Query: 121 gcctttgaagttacattgctacattcttgaagtatagttcttctggtatcagtgaatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctttgaagttacattgctacattcttgaagtatagttcttctggtatcagtgaatgga 380

                                                                       
Query: 181 gtgactttgatttagagtgtaagtggactgcccactgcagggacccttccgtctccaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgactttgatttagagtgtaagtggactgcccactgcagggacccttccgtctccaggt 440

                                                                       
Query: 241 ttagcttcctattggcctcaggagagaactgttttccctatagtatgtacctaatttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagcttcctattggcctcaggagagaactgttttccctatagtatgtacctaatttttg 500

                                                                       
Query: 301 ggaagtggttgtttaggtatgcaaattctaaacctaattagctgttatttcttttcagct 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagtggttgtttaggtatgcaaatcctaaacctaattagctgttatttcttttcagct 560

                                                                       
Query: 361 caaatcctaatggccttggatgtctaagaccttggatgtcactttgctaggtaagaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatcctaatggccttggatgtctaagaccttggatgtcactttgctaggtaagaaagg 620

                                                                       
Query: 421 ctagagtgagttggcacagaggaggggacactgcctttggccactggctgctctccaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagagtgagttggcacagaggaggggacactgcctttggccactggctgctctccaaaa 680

                                                                       
Query: 481 caggtgaactttgtgtttgaaaggaatgcatttaatcatttgggcctaatagaagttact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggtgaactttgtgtttgaaaggaatgcatttaatcatttgggcctaatagaagttact 740

                                                                       
Query: 541 tgtattttctctcctttttgcccctcctgtctctcctttacccccccccc----ttgctg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 741 tgtattttctctcctttttgcccctcctgtctctcctttaccccccccccccccttgctg 800

                                                                       
Query: 597 cttcctcaaccaccaaagaatttaatctgctgcacaacaaacaatacagttataaaactt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttcctcaaccaccaaagaatttaatctgctgcacaacaaacaatacagttataaaactt 860

                                  
Query: 657 tgacaacaagagggtgtagcctc 679
           ||| |||||||||||||||||||
Sbjct: 861 tgaaaacaagagggtgtagcctc 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1083
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1073
Effective search space:   717837
Effective search space used:   717837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)