BAC Information

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BAC

Clone NameMSMg01-261K06
Chromosome1 (Build37)
Map Location 90,147,794 - 90,148,233
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261K06.T7 (MSMg01no261_k06.b1)MSMg01-261K06.TJ (MSMg01no261_k06.g1)
ACCAG403968AG403969
length737745
length of high quality
(start - end)
449 (47 - 495)373 (76 - 448)
definitionCHROMAT_FILE: MSMg01no261_k06.b1 PHD_FILE: MSMg01no261_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:04 2005CHROMAT_FILE: MSMg01no261_k06.g1 PHD_FILE: MSMg01no261_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTCTTGCTCCGATCCTAGGTGGTTTGCCCAGAGTTTAACTTCG
ACGAGGTTGTCTCTCTCATCCAGAAGCTCTGTGAGAACATTGGGGCCATG
GACCTGCAGCATGACAGGGCTGCTGTTACCTGGATAGGCATCTTCCTCCA
GATGCGGGTCAAGGAGCTGGAGGACAAGGTAACCAAGCTCAGCAGGGGAT
GCTTGGATTGGTACTGGGACTGACCTGTGTAGCACACACGGAGAATGACC
ACTTCCACCCAAACTAGGAGTGCTAAAGGGGATAAAACAGAGTTCTAGAA
TGAGAAATCTGTTGAGATGTAACTAGTCAGTGAGTAGATGAGGGACTACT
GGTGCCAGGCTCTTTTCAGCAAACCACAGTGAAGACACACTGAACATGTA
GGAGGAAAAGACCCATAGGGCTTCCAGAGAGGGCTTTTGGGAGTGGGGTG
TCTAACCAACACACCATGTTTCCCAAGATAGGAGTATCCTTCAGGGGCCC
AGAAATACCTTTATTTCTGTCTCTGCCATATAGTACACTGATCAAACTCC
ATTTACCCAAGTCCATGCTCAAAACACGTTATAGCTCATCACTGAGGGAA
ATTAATTAATCTAGTGAATTTATATCCACAGATAAAAACAGTGTGGGTGC
TAGACACTTTTCCACCTCTATTCACTCCGTTTGTCTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCACTCTGCCTCAATAAACACACAC
ACACACACACACACACACACACACACACACACACACGCACACACACACAC
ACACACACACACTTACCTGCTGAGACATGAAGTTGTTTAGGATTGTATTA
AGTTTCTCAGTTGTTGCCCAATTCAGTCTTGTAAGTGCCATTGTACACCT
GGTGAATTCTTTACAGATATAATTAAGGAGAATATCATGATTTTATAAAC
TCAAATGAATGAGACTCATCAATTCAGATTCCCAGTAACAATTGTATTCT
GAGAGTGTAAATATTAGAGACATATTTGGCAAAATATCAGGGTTCCTGTT
GATTTCATATATGGAAAAGCCAAAGCCAGAGCATACTTGCGATTTTCAGT
ATGAGTTCTGCAAAAGTTTATAGTGTTTAAAATTAGCAGCAATTTACAGA
TAACATTTGGAGTCAATAAAAGGACAATTCTCTACTGTATTGTATTGCCC
ACACCCCATAAAGATAAAATAGATATGTGCAATGTGCTCTGATATGCTAC
ATAACCTGTTAATTCATTCACATCTTCGAAATGTCTCACGAATTATTATC
TCCCCAAAAATGTATATGCTACCACTATTTAGAAATATCATTCACTTTTC
AAAAAACCCATACCCGATTCCCTTTTTATTTCCCATATTACTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_k06.b1 MSMg01no261_k06.b1 CHROMAT_FILE:
MSMg01no261_k06.b1 PHD_FILE: MSMg01no261_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:04 2005
         (449 letters)



>mm_chr1_90147591_90148434
          Length = 844

 Score =  737 bits (381), Expect = 0.0
 Identities = 427/445 (95%), Gaps = 5/445 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtcttgctccgatcctaggtggtttgcccagagtttaacttcgacgaggttg 63
           |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattctgttttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttg 263

                                                                       
Query: 64  tctctctcatccagaagctctgtgagaacattggggccatggacctgcagcatgacaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctctctcatccagaagctctgtgagaacattggggccatggacctgcagcatgacaggg 323

                                                                       
Query: 124 ctgctgttacctggataggcatcttcctccagatgcgggtcaaggagctggaggacaagg 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgctgtcacctggataggcatcttcctccagatgcgggtcaaggagctggaggacaagg 383

                                                                       
Query: 184 taaccaagctcagcaggggatgcttggattggtactgggactgacctgtgtagcacacac 243
           |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 384 taaccaagctcagcaggggatgcttgg-----tactgggactgacctgtgtagcacacac 438

                                                                       
Query: 244 ggagaatgaccacttccacccaaactaggagtgctaaaggggataaaacagagttctaga 303
           ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 ggagactgaccacttccatccaaaccaggagtgctaaaggggataaaacagagttctaga 498

                                                                       
Query: 304 atgagaaatctgttgagatgtaactagtcagtgagtagatgagggactactggtgccagg 363
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 atgagaaagctgttgagatgtaactagtcagtgagtagatgagggaccactggtgccagg 558

                                                                       
Query: 364 ctcttttcagcaaaccacagtgaagacacactgaacatgtaggaggaaaagacccatagg 423
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctcttttcagtgaagcacagtgaagacacactgaacatgtaggaggaaaagacccatagg 618

                                    
Query: 424 gcttccagagagggcttttgggagt 448
           ||||| |||||||||||||||||||
Sbjct: 619 gcttctagagagggcttttgggagt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 844
Length adjustment: 10
Effective length of query: 439
Effective length of database: 834
Effective search space:   366126
Effective search space used:   366126
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)