Query= MSMg01no261_l07.b1 MSMg01no261_l07.b1 CHROMAT_FILE:
MSMg01no261_l07.b1 PHD_FILE: MSMg01no261_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:09 2005
(319 letters)
>mm_chr1_82830521_82831239
Length = 719
Score = 526 bits (272), Expect = e-154
Identities = 305/316 (96%)
Strand = Plus / Plus
Query: 4 ggaattcctctctagggccaagcgtctgaatatctggccctgttgtcagccccttgtcct 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctctctaggggtaagcgtctgaatatctggccctgttgtcagccccttgtcct 263
Query: 64 ctgcttgctgatttcccccacatgagccaggctccattacatactcctggtcccatgact 123
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcttactgatttgtgccacatgagccaggctccattacatactcctggtcccatgacc 323
Query: 124 gcagcaaggccttccctgtcatggtacattggaacgtctgcatagccaggagccaaaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagcaaggccttccctgtcatggtacattggaacgtctgcatagccaggagccaaaata 383
Query: 184 aacccttctccctttgagtagtttctgtccggtatatatatggtcacagtaatgcaaaac 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 aacccttctccctttgagtagtttctgtccagtatatatatggtcacagtaatgcaaaac 443
Query: 244 ttagcaacataaaacagacctttgagatccaagaaagcaatataaggcaaccccaccatt 303
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 444 ttagcaacataaaacagacctttgagatccaagaaagcaacataaagcaaccccaccatt 503
Query: 304 cactacctaaatccaa 319
|||| |||||||||||
Sbjct: 504 cacttcctaaatccaa 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_l07.g1 MSMg01no261_l07.g1 CHROMAT_FILE:
MSMg01no261_l07.g1 PHD_FILE: MSMg01no261_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:09 2005
(534 letters)
>mm_chr1_82849137_82850069
Length = 933
Score = 994 bits (514), Expect = 0.0
Identities = 529/534 (99%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 1 catggagggaacagctgactccctcccaccagctgttctctgacctccatatatgtgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggagggaacagctgactccctcccaccagctgttctctgacctccatatatgtgctc 562
Query: 61 gtagcatacccagacctacacatctacacaaaataaatgttaaagaacataaagaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagcatacccagacctacacatctacacaaaataaatgttaaagaacataaagaattaa 502
Query: 121 aaatagcacagcagcaaataaccaagaataaactatatcattcaatgcaactggccagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatagcacagcagcaaataaccaagaataaactatatcattcaatgcaactggccagaa 442
Query: 181 aatacaagttcataatgtttaaaaaaaataaaaaagaaagaaaatgtacaaagcacctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatacaagttcataatgtttaaaaaaaataaaaaagaaagaaaatgtacaaagcacctac 382
Query: 241 acaggcaattagcatatttaatcaatttaacttaatcaagttaatcaattgaactgttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggcaattagcatatttaatcaatttaacttaatcaagttaatcaattgaactgttat 322
Query: 301 atatgacagacaaggtagtcttttggctttgctgtttaactgtctttgtgtgtgtgcata 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgacaga-aaggtagtcttttggctttgctgtttaactgtctttgtgtgtgtgcata 263
Query: 361 tgtgtgtgctgggtgtatgcagatgccagtgcaggtgtctgggaggtcacaagaaggtgg 420
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtgtgtgcggggagtatgcagatgccagtgcaggtgtctgggaggtcacaagaaggtgg 203
Query: 421 agggatccctagagctggggtcaggtcagagtgaggggctgtgtgagtgctaggagctga 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agggatccctagagctggagtcaggtcagagtgaggggctgtgtgagtgctaggagctga 143
Query: 481 actcaggccctaggcaggaggagtacaggcttataactgccaagccatctctcc 534
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 142 actcaggccctaggcaggaggagtacaggcttaaaactgccaagccatctctcc 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space: 483652
Effective search space used: 483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
