Query= MSMg01no261_m24.b1 MSMg01no261_m24.b1 CHROMAT_FILE:
MSMg01no261_m24.b1 PHD_FILE: MSMg01no261_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:17 2005
(664 letters)
>mm_chr1_81149711_81150774
Length = 1064
Score = 648 bits (335), Expect = 0.0
Identities = 398/433 (91%), Gaps = 23/433 (5%)
Strand = Plus / Minus
Query: 1 gagagtggacttgttttactggctgaagggtaaggagaaattctgccatttgcaattcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gagagtggacttgttttactggctgaagggtaaggagaaattctgccatttgcaattcct 351
Query: 61 tcccctccctaaacacttctcttggttggatgttctttgaattgtttataaatgtatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcccctccctaaacacttctcttggttggatgttctttgaattgtttataaatgtatttc 291
Query: 121 tttcctttgactctttttcacatctgctattgaaaacttaaagcatatccacatgccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tttcctttgactctttttcacatctgctattgaaaacttaaagcatatccacatgccaat 231
Query: 181 tctagagcttggatcctattatcctttgtccttcctcctcctcttcctcctcctcctcct 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 230 gctagagcttggatcctattatcctttgtccttcctcctcctcctcctcctcctcctcct 171
Query: 241 cctcctcctcctcttttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 300
||||||||||||| | || || || || || || || ||
Sbjct: 170 cctcctcctcctc----------------------c-tcctcctcctcctcctcctcctc 134
Query: 301 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttccttctaata 360
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ctcctcctcttcttcttcttcttcttcttcttcttcttcttcttcttcttccttctaata 74
Query: 361 tgatctccaatgtttctctttaatcactccaattacatatcctataagtagctttcgggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tgatctccaatgtttctctttaatcactccaattacatatcctataagtagctttcgggt 14
Query: 421 cttatacattaaa 433
|||||||||||||
Sbjct: 13 cttatacattaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 150
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_m24.g1 MSMg01no261_m24.g1 CHROMAT_FILE:
MSMg01no261_m24.g1 PHD_FILE: MSMg01no261_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:17 2005
(664 letters)
>mm_chr1_80988174_80989236
Length = 1063
Score = 1116 bits (577), Expect = 0.0
Identities = 640/661 (96%), Gaps = 1/661 (0%)
Strand = Plus / Plus
Query: 4 ggttcgaacaaaggccctcatgcttgtgagacaaactctttattgaccgagctatccctg 63
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggttcgaatgaaggccctcatgcttgtgagacaaactctttattgacagagctatccctg 263
Query: 64 tactaactgcattcaaatatttcaaagcagaataattagatgattaaatacaaagatgta 123
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 cactaactgaattcaaatatttcaaagcagaataattagatgatcaaatacaaagatgta 323
Query: 124 aacaaatcatgctggccctagcttggagaataaatagcattagacataaggagctgggaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 aacaaatcatgctggccctagcttggagaataaatagcattagacataaggagttgggaa 383
Query: 184 gagtgttggactcatccagtgagaataaaagaaagatagacattaagtaaagcgatgaaa 243
|||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 384 gagtgttggacttatccagtgagaatacaagaaagatagacattaagtaaagtgatgaaa 443
Query: 244 gggacagatggacactataaggagatttggtgaactcatctgtttggtaaattggtaacc 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggacagatggacactataaggacatttggtgaactcatctgtttggtaaattggtaacc 503
Query: 304 atgatcagtatcaagaggagaatatcaaggatgtaagagaaaagcaggagttatgtataa 363
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 atgatcaatatcaagaggagaatatcaaggatataagagaaaagcaggagttatgtataa 563
Query: 364 gaaaactacactgaagaaaatacttgtaaactaccaaaatgtaatagattttgaatttaa 423
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 564 gaaaactacactgaagaaaatacttgtaaactactaaaatataatagattttgaatttaa 623
Query: 424 atactataattagagttcatggtttctttttccaaacttctacaaagagtaatatttatg 483
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 atactataattagagttcatggtttctttttccaaacttctacaaagaataatatttatg 683
Query: 484 ggatcgacatttgtaagtagactagaaatataacaggcaaaagggtaaaactcaaactaa 543
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggattgacatttataagtagactagaaatataacaggcaaaagggtaaaactcaaactaa 743
Query: 544 tacatttaaagaaaaataataattaaaactaattgccattattaatagttatacccatga 603
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 744 tacatttaaagaaaaataataattaacactaattgccattattaatagttatatccatga 803
Query: 604 taaaatgaaggaggggagaagagggaagtagattcactttaccccaccacataaggacta 663
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taaaatgaaggagggg-gaagagggaagtagattcactttaccccaccacataaggacta 862
Query: 664 t 664
|
Sbjct: 863 t 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
