BAC Information

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BAC

Clone NameMSMg01-261N10
Chromosome1 (Build37)
Map Location 52,855,233 - 52,855,692
singlet/doubletsinglet
Overlap geneInpp1
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik
Downstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261N10.T7 (MSMg01no261_n10.b1)MSMg01-261N10.TJ (MSMg01no261_n10.g1)
ACCAG404107AG404108
length727727
length of high quality
(start - end)		467 (41 - 507)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no261_n10.b1 PHD_FILE: MSMg01no261_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:19 2005CHROMAT_FILE: MSMg01no261_n10.g1 PHD_FILE: MSMg01no261_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAATCCGCGGAATT
CTACAGTAGTTCTCCGGTTTAAAAAGTTCAATAAAGATATTGAAGTGTTT
TATATTATTTTCTATCATAAAGCTCCATCCTCCCAAATTTAAAAAAAAAA
AGAAGGTGGGGCGAGTTATATAAAAGACGACAGAATGCCCAGTGACACAG
ACTTAGAAACCATTTCCTATGTTGAAGAACTCAAGCTGTCATGCTGGGCA
GCGTCAATTCAGGCAACTTACTCCAGCGCTCTGTGACAGCTTCATCCTAG
TAGAGCAATGGCTCTGACCTTACAGAATCCTTACAGGGTAACAAAGTCAA
GTCCATGCAGCCTGGTACTCAGTGAGCACTGCTTGCTGGTGTTACTGCTA
CGACTCAAGAAGCCTGGCTTTTTCTAGCCATTTCCACACATAGAATCACA
ATCAGTGTTTGTCATGACCATATTTTTATAGTAGAATAAAGGGAGATTTC
GCCTAATTCCAAGCCCATAACCAAAGCAAAACATTAGATAAATGGTTTAG
CTGAGAAGCCAAACACTGCTCTGAAATAAGTGGGTCAGAGCGTGGACACT
CAGAAGGAAGCGTCAGTGGCCCTCGGGAGCATGTAGCTCAGTGTGCTCTG
GTGCAGAGAGCATATATTATTTATTACCAAGAAACCCTCCACTAATAAAA
AGGGTCAATACCATATACTCCGGGTTA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTTCCCCATTTTTA
ATAGGGTTATTTGGTTCCCTGGAGTCGAACTTCTTGAGTTCTTTGTATAT
ATTGGATATTAGCCCCTCCATCGGATATAACACTGGTAAAGATCTTTTCC
CAAACTGTTGGTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACA
GAAGATTTGCAATTTTATGTGGTCCCATTTGTAGATTGTTGATGTCAATA
AGAGCATAAGCCGTTGGAGATTCCAAAGTTCAGGAATGTTTTTTCCCCTG
TGCCCATGTGTTTGAGACTTTTCCCCACTTTCTCTTCTATTAGATTCAGT
GTATCTGGTTTTATGTGGAGGGCCTTCATCCACTTGGTTATGAGCTTTGT
ACAGAAAGATAAGAATGGATCAATTTGTATTCTTCTACATGTTGACTATC
AGTTGAACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTTTTT
TTTTTTTTTAGCTCCTTTGTCAAAGATCAATTGACCAGAGGTGTATGGGT
TCATTTCTGGGACTTCAATTCAATTCAATCCTACCTGACTGCCACTGTAC
TAATACCATTGTAATTTTTATCACTATTGCTCTGTAATATAGCTTGAGGC
CCAGGGACGGGGAATCCCCTCAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_n10.b1 MSMg01no261_n10.b1 CHROMAT_FILE:
MSMg01no261_n10.b1 PHD_FILE: MSMg01no261_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:19 2005
         (467 letters)



>mm_chr1_52855028_52855892
          Length = 865

 Score =  774 bits (400), Expect = 0.0
 Identities = 446/466 (95%), Gaps = 10/466 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctacagtagttctccggtttaaaaagttcaataaagatattgaagtgttttatat 65
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacagtagtcctcaggtttaaaaagttcaataaagatattgaagtgttttatat 265

                                                                       
Query: 66  tattttctatcataaagctccatcctcccaaatttaaaaaaaaaaa---gaaggtggggc 122
           ||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||
Sbjct: 266 tattttctatcataaagttccatcctcccaaatttaaaaaaaaaaaaaagaaggtggggc 325

                                                                       
Query: 123 gagttatataaaagacgacagaatgcccagtgacacagacttagaaaccatttcctatgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagttatataaaagacgacagaatgcccagtgacacagacttagaaaccatttcctatgt 385

                                                                       
Query: 183 tgaagaactcaagctgtcatgctgggcagcgtcaattcaggcaacttactccagcgctct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 tgaagaactcaagctgtcatgctgggcagcgtcaattcaggcaacttactccagctctct 445

                                                                       
Query: 243 gtgacagcttcatcctagtagagcaatggctctgaccttacagaatccttacaggg-taa 301
           ||||||||||||||| |||||| |||||||||| |||||||||||| |||| |||| |||
Sbjct: 446 gtgacagcttcatcccagtagaacaatggctctaaccttacagaattcttataggggtaa 505

                                                                       
Query: 302 caaagtcaagtccatgcagcctggtactcagtgagcactgcttgctggtgttactgctac 361
           ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||
Sbjct: 506 caaagtcaagtccatgcagcct------cagtgagcactgcttgctggtgttactgctac 559

                                                                       
Query: 362 gactcaagaagcctggctttttctagccatttccacacatagaatcacaatcagtgtttg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gactcaagaagcctggctttttctagccatttccacacatagaatcacaatcagtgtttg 619

                                                         
Query: 422 tcatgaccatatttttatagtagaataaagggagatttcgcctaat 467
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tcatgaccatatttttatagtagaataaagggagagttcgcctaat 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 865
Length adjustment: 10
Effective length of query: 457
Effective length of database: 855
Effective search space:   390735
Effective search space used:   390735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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