BAC Information

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BAC

Clone NameMSMg01-261P09
Chromosome1 (Build37)
Map Location 165,540,035 - 165,540,570
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261P09.T7 (MSMg01no261_p09.b1)MSMg01-261P09.TJ (MSMg01no261_p09.g1)
ACCAG404196AG404197
length728724
length of high quality
(start - end)
536 (70 - 605)580 (77 - 656)
definitionCHROMAT_FILE: MSMg01no261_p09.b1 PHD_FILE: MSMg01no261_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:28 2005CHROMAT_FILE: MSMg01no261_p09.g1 PHD_FILE: MSMg01no261_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATCCGCGG
AATTCACCGAAGTCTCCACCACAGACGTTCTCAGATGGTGCTAATAAAAA
GAACAAACCCAAACCAGAATTGGCGGTCCACACTGTGAGAGTTGCTAAAC
GTCATCACAAAGCAGTAATTATCCTGTAGCATGCTTGGTGGCTCAACATC
CTGAAATGCAAATGTCAAGGGCATACAGTCTCTGCGATGTTGCTAATGGG
AGCTCATGTTTTGTGTTGGGTGGTCCTGTGTTCTGCCTGGTGGTCTTGTT
TCTGCTTGCTATGACAGCGCTAATGATTTCATGTAACCCCCTCTCCATCC
GACATAGTATTCACTTGTCTCCCTTTGGTAATTCACAGCCAGTCATAAAA
GACAGACTACCCAGAAATGACACTGCAGTGTTCCAGACATGCTCTCTCTT
GGTGGTGACAGTTCCAAATCAAGCTGGCTCAGAGCTTAAGTCAAAGCATT
CTTCTACGTTCTGGTTCAAAAATACAGTCTTAGATCTGGAAAATCAAAAC
TGGGCTCCGCTTGCCTCTTCCATCATTGCTTGTAATAAATATTCAACTCT
CGGGCTTCAGCTGGCCATTTATGATAGATGACACATAGATAGATCCAACT
CTCTTTCTCTCAGATGTAAGAAACTTGTCTTTTGGTTAAAAAGAATTCAC
TACCTTTTGCTAACCGAAGGCAGATCAT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATTAAAACAACCCTGAGATTCCACCTCACACCAGCCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGTAGATGCTTGCGAGGATGTGGACAAAGAGGA
ACACTCCTTCGTTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAACACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAACCAG
AAGCTGGAAAGAACCCAGATGCCCCTAAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACCCAATCACAAAGGAACTCATACAATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTT
GCTAAACGCATGGAACTCAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_p09.b1 MSMg01no261_p09.b1 CHROMAT_FILE:
MSMg01no261_p09.b1 PHD_FILE: MSMg01no261_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:28 2005
         (536 letters)



>mm_chr1_165539835_165540770
          Length = 936

 Score = 1021 bits (528), Expect = 0.0
 Identities = 534/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagacgttctcagatggtgctaataaaaagaacaaacccaaaccagaattggcggtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cacagacgttctcagatggtgctaataaaaagaacaaacccaaaccagaattggtggtcc 260

                                                                       
Query: 61  acactgtgagagttgctaaacgtcatcacaaagcagtaattatcctgtagcatgcttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgtgagagttgctaaacgtcatcacaaagcagtaattatcctgtagcatgcttggt 320

                                                                       
Query: 121 ggctcaacatcctgaaatgcaaatgtcaagggcatacagtctctgcgatgttgctaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcaacatcctgaaatgcaaatgtcaagggcatacagtctctgcgatgttgctaatgg 380

                                                                       
Query: 181 gagctcatgttttgtgttgggtggtcctgtgttctgcctggtggtcttgtttctgcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctcatgttttgtgttgggtggtcctgtgttctgcctggtggtcttgtttctgcttgc 440

                                                                       
Query: 241 tatgacagcgctaatgatttcatgtaaccccctctccatccgacatagtattcacttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgacagcgctaatgatttcatgtaaccccctctccatccgacatagtattcacttgtc 500

                                                                       
Query: 301 tccctttggtaattcacagccagtcataaaagacagactacccagaaatgacactgcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccctttggtaattcacagccagtcataaaagacagactacccagaaatgacactgcagt 560

                                                                       
Query: 361 gttccagacatgctctctcttggtggtgacagttccaaatcaagctggctcagagcttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttccagacatgctctctcttggtggtgacagttccaaatcaagctggctcagagcttaa 620

                                                                       
Query: 421 gtcaaagcattcttctacgttctggttcaaaaatacagtcttagatctggaaaatcaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaaagcattcttctacgttctggttcaaaaatacagtcttagatctggaaaatcaaaa 680

                                                                   
Query: 481 ctgggctccgcttgcctcttccatcattgcttgtaataaatattcaactctcgggc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ctgggctccgcttgcctcttccatcattgcttgtaataaatattcaactcttgggc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)