Query= MSMg01no261_p24.b1 MSMg01no261_p24.b1 CHROMAT_FILE:
MSMg01no261_p24.b1 PHD_FILE: MSMg01no261_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:31 2005
(645 letters)
>mm_chr1_31392255_31393299
Length = 1045
Score = 1091 bits (564), Expect = 0.0
Identities = 620/650 (95%), Gaps = 18/650 (2%)
Strand = Plus / Minus
Query: 13 ggaattctctgaactgttacctttgggggaaaataatgaccctgggccatttttaaatac 72
|||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 665 ggaattctctgacctgttaactttgggggaaaataatgaccctgggacatttttaaatac 606
Query: 73 taggaagaaaatgaaggacacaatattcctgtctgtttaacacagatatagcacgttgtg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 taggaagaaaatgaaggacacaatattcctgtctgtttaacacagatatagcacgttgtg 546
Query: 133 ccaagccttgcatctgaacaccttgaaagcactaaatcatttgaattagaggctctaata 192
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 545 ccaagccttgcatctgaacaccttgaaagcactaaatcatttgaatcagaggctctaata 486
Query: 193 tttcaccttcaatagcaaacaccacagctgggctcctcttgcctgcctgttctatcactt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttcaccttcaatagcaaacaccacagctgggctcctcttgcctgcctgttctatcactt 426
Query: 253 ggtgtgggaatccagagcttcgctatctccagggcaacattcttcccttcccaagctctt 312
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 425 ggtgtgggaatccggagcttcgctatctccagggcaacactcttcccttcccaagctctt 366
Query: 313 ccttcacttactacactgtagcttcctgaactccgctcatccatctccacttttccttgg 372
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 365 ccttcacttactacactgtagcttcctgaactctgctcatccatctccacttttccttgg 306
Query: 373 agtcccattatctaaccaccgcggtgtccaagtgagccctttgggccaatttcttgacac 432
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agtcccattatctaagcactgtggtgtccaagtgagccctttgggccaatttcttgacac 246
Query: 433 gcct------------------actctcttagacactcccactctcttagaaatcctgtg 474
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcctactctcttagacactcccactctcttagacactcccactctcttagaaatcctgtg 186
Query: 475 tattcacttgaactcgtttgacctccaacttatatccagaaaagaaacttgtcctttgaa 534
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 185 tattcactcgaactcgtttgacctccaacttacatccagaaaagaaacttgtcctttgaa 126
Query: 535 ctgcagccttattcagtatcctcctagacatctcagattagactgatgggtaacaaagat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctgcagccttattcagtatcctcctagacatctcagattagactgatgggtaacaaagat 66
Query: 595 tttaataataatggatacaaagctgagcttttcaccttttccctactttg 644
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tttaataataatggatacaaagctgagcttttcaccttttccctactttg 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_p24.g1 MSMg01no261_p24.g1 CHROMAT_FILE:
MSMg01no261_p24.g1 PHD_FILE: MSMg01no261_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:31 2005
(614 letters)
>mm_chr1_31183007_31184020
Length = 1014
Score = 1172 bits (606), Expect = 0.0
Identities = 612/614 (99%)
Strand = Plus / Plus
Query: 1 tttcatatgcacatgtttatgatttgtgcatgtacaagcacttttgataccaccaccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatatgcacatgtttatgatttgtgcatgtacaagcacttttgataccaccaccaca 260
Query: 61 atcaccaacatctctaaacattgcttgagtccactgaagaacacttggcatctatgttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaccaacatctctaaacattgcttgagtccactgaagaacacttggcatctatgttcc 320
Query: 121 taacagttttgttatttgcttacttgtttgattggttttgtatttcaagatagagtttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagttttgttatttgcttacttgtttgattggttttgtatttcaagatagagtttgt 380
Query: 181 ctgggtagccctagctgccctggaactcactctgtagttcaggctagacttaaactcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggtagccctagctgccctggaactcactctgtagttcaggctagacttaaactcaga 440
Query: 241 gacccacttgcctctgtacctgagccattttacctgcttctgcaacagcctgtctgtcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacccacttgcctctgtacctgagccattttacctgcttctgcaacagcctgtctgtcag 500
Query: 301 gtagagtcaagtcaggccaaggtctgctggcagtttttctggcctgctaacgcacggaac 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 501 gtagagtcaagtcaggccaaggtctgctggcagtttttctggcctgctaatgcatggaac 560
Query: 361 cataagaggggatatacttgaagctcaaggcaaggggatgaatgttctgttagtattgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataagaggggatatacttgaagctcaaggcaaggggatgaatgttctgttagtattgga 620
Query: 421 ggaaagaacaaggaggaatagggaagcctccagataggtacagatattgaaggtacatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaagaacaaggaggaatagggaagcctccagataggtacagatattgaaggtacatca 680
Query: 481 gctatggtctctgctggcttgtgactttgttttccataattctgtaaagtatataaagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctatggtctctgctggcttgtgactttgttttccataattctgtaaagtatataaagcc 740
Query: 541 tgaaagaattaaactcaaggctgctgcagtactgagtggacagtccttccaatttctaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaagaattaaactcaaggctgctgcagtactgagtggacagtccttccaatttctaac 800
Query: 601 ctttgtctctgagt 614
||||||||||||||
Sbjct: 801 ctttgtctctgagt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
