BAC Information

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BAC

Clone NameMSMg01-262A03
Chromosome1 (Build37)
Map Location 32,066,516 - 32,210,252
singlet/doubletdoublet
Overlap geneLOC100041238
Upstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneKhdrbs2, EG408191, EG633498, LOC213711, LOC100040828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262A03.T7 (MSMg01no262_a03.b1)MSMg01-262A03.TJ (MSMg01no262_a03.g1)
ACCAG404232AG404233
length792717
length of high quality
(start - end)		309 (46 - 354)598 (77 - 674)
definitionCHROMAT_FILE: MSMg01no262_a03.b1 PHD_FILE: MSMg01no262_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:32 2005CHROMAT_FILE: MSMg01no262_a03.g1 PHD_FILE: MSMg01no262_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,066,516 - 32,066,818)(32,209,658 - 32,210,252)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATCCGCGG
AATTCACAGTTTTATGATCCCTTACTGCTCTGAAAGATCCAAGCTTTCCC
TTGCATAGTGTCCTCCTCTTGCTTTGACATCCTCATTACATCTTCTCCAA
ATTCAAAACAATTGGCTGTTCATGCTTTCCTGTTCAAATAAATTGAAATA
TATCTTTTTTCAGTTGAAAATGATTACATCAGATGTTAGGGACTTAGGAA
ACATCAATATATAAGTGGTAGATGAAAATCTTGTATGTATTACACATTCA
TCAATGTGTGTATCTGATGTGTGTGTGTGTATGTATGTATGTATGTATGT
ATGTATGCCCTCTTATTTATATTCCCACTATTACTCCTCTCCCTCTTTTC
ATAATTCATTAACAACCTACTCCCACTCTCATTTAATATTTTTTATCCTT
ACTCTCCATCCACCCTAAATATTTATTATTAATCATATCATTATTTCTCA
CTATTTCCCCCTACTTTTTTTTCTCTTTTCTCCTCCTTTTATATTTCTTA
CACTATACTTTACACTTCTATCTTCCTACCCCACACTCTTCCCTACAACT
TTATACCTCAAATATTTATTCATTATTTTAGATATTATATTATTACAACG
GTATTACACATTATCATATATATATATTCAACCTTATCTACCAACCCACC
ATTCCCTCCTTATTCCTATTACATCGCCCCTAAGTTATACTTTTTACATA
CTTATTATAAAAATCCAAACCTCTACTATTACCCCTTTTACN

CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAATTTGGAAAAGATGTACA
CTTAAAATGATTCATGTATGAATTATTATTACAATATTTTAGCTACTCTT
ATTCCATGCCCTCTTTACTAAATTCTTTTGCTGAGAGCTCTGATTCATTA
GGCATCTGTAGTTCAATGACTGGGGAATGCTTGGGGCTACAAGTCAGGTG
ACCGTTCTAAGTGAATTCCACTCCCACACATGTGGTTTAGAGAAGTGAGC
CACGTGGTCTCTCCAATTGGAAGAAAACTAAACCTAAACATGTAACTTGG
AGGACTCAAATGATATTACTATATACTATGAGTGTTTGGGCCATGCACCT
ACTAAAGCATGTAAAACATAGAATTTCTTAACATTAAGATATTTCTTGAC
AAGCCTCCACACTTTATTAATAATTTATGGTACCATCAAGAATGTATCAT
TTTCCTTCATAGTATTCCACTCTTGCATCTTTGTTAATCTCATGTGTGAC
TGAAGTATACTTTATAAATTATATCTCTATCTGTATTTCTCATGTTATAA
AATGATAAAACATCTTGTTCACTGCCTTGTAAAGCTAGTTCATTTCTCTC
ATTGTTATTCAAATGATATTGGAGGGGTTTTCTCTCGGGTTTTCCTTCTC
AGGGGGCCTTTTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_a03.b1 MSMg01no262_a03.b1 CHROMAT_FILE:
MSMg01no262_a03.b1 PHD_FILE: MSMg01no262_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:32 2005
         (309 letters)



>mm_chr1_32066310_32067018
          Length = 709

 Score =  540 bits (279), Expect = e-158
 Identities = 297/303 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcacagttttatgatcccttactgctctgaaagatccaagctttcccttgcatagtgt 66
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcacagttttatgatgtcttactgctctgaaagatccaagctttcccttgcatagtgt 266

                                                                       
Query: 67  cctcctcttgctttgacatcctcattacatcttctccaaattcaaaacaattggctgttc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctcctcttgctttgacatcctcattacatcttctccaaattcaaaacaattggctgttc 326

                                                                       
Query: 127 atgctttcctgttcaaataaattgaaatatatcttttttcagttgaaaatgattacatca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 327 atgctttcctgttcaaataaattgaaatatatcttttttcagttgaaaatgatcacatca 386

                                                                       
Query: 187 gatgttagggacttaggaaacatcaatatataagtggtagatgaaaatcttgtatgtatt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatgttagggacttaggaaacatcaatatataagtggtagatgaaaatcttgtatgtatt 446

                                                                       
Query: 247 acacattcatcaatgtgtgtatctgatgtgtgtgtgtgtatgtatgtatgtatgtatgta 306
           | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 447 atacattcatcaatgtgtgtatctgatgtgtatgtatgtatgtatgtatgtatgtatgta 506

              
Query: 307 tgt 309
           |||
Sbjct: 507 tgt 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_a03.g1 MSMg01no262_a03.g1 CHROMAT_FILE:
MSMg01no262_a03.g1 PHD_FILE: MSMg01no262_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:32 2005
         (598 letters)



>mm_chr1_32209458_32210455
          Length = 998

 Score = 1135 bits (587), Expect = 0.0
 Identities = 593/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaatttggaaaagatgtacacttaaaatgattcatgtatgaattattattacaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 attaaaatttggaaaagatgtacacttaaaatgattcatgtatgaattattattacaata 736

                                                                       
Query: 61  ttttagctactcttattccatgccctctttactaaattcttttgctgagagctctgattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttttagctactcttattccatgccctctttactaaattcttttgctgagagctctgattc 676

                                                                       
Query: 121 attaggcatctgtagttcaatgactggggaatgcttggggctacaagtcaggtgaccgtt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 attaggcatctgtagttcaatgactgggaaatgcttggggctacaagtcaggtgaccgtt 616

                                                                       
Query: 181 ctaagtgaattccactcccacacatgtggtttagagaagtgagccacgtggtctctccaa 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 615 ctaagtgaattccactcccacacacgtggtttagagaagtgagccacgtggtctctccaa 556

                                                                       
Query: 241 ttggaagaaaactaaacctaaacatgtaacttggaggactcaaatgatattactatatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttggaagaaaactaaacctaaacatgtaacttggaggactcaaatgatattactatatac 496

                                                                       
Query: 301 tatgagtgtttgggccatgcacctactaaagcatgtaaaacatagaatttcttaacatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatgagtgtttgggccatgcacctactaaagcatgtaaaacatagaatttcttaacatta 436

                                                                       
Query: 361 agatatttcttgacaagcctccacactttattaataatttatggtaccatcaagaatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agatatttcttgacaagcctccacactttattaataatttatggtaccatcaagaatgta 376

                                                                       
Query: 421 tcattttccttcatagtattccactcttgcatctttgttaatctcatgtgtgactgaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcattttccttcatagtattccactcttgcatctttgttaatctcatgtgtgactgaagt 316

                                                                       
Query: 481 atactttataaattatatctctatctgtatttctcatgttataaaatgataaaacatctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atactttataaattatatctctatctgtatttctcatgttataaaatgataaaacatctt 256

                                                                  
Query: 541 gttcactgccttgtaaagctagttcatttctctcattgttattcaaatgatattg 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gttcactgccttgtaaagctagttcatttctctcattgttattcaaatgatattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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