Query= MSMg01no262_b02.b1 MSMg01no262_b02.b1 CHROMAT_FILE:
MSMg01no262_b02.b1 PHD_FILE: MSMg01no262_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:37 2005
(308 letters)
>mm_chr1_71240969_71241676
Length = 708
Score = 526 bits (272), Expect = e-154
Identities = 295/306 (96%), Gaps = 6/306 (1%)
Strand = Plus / Plus
Query: 3 gaattctgccccctctgctcatatcttccctaggtctgagatgcagggactggactctac 62
||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 203 gaattttgccccctctgcttatatcttccctaggtctgagatgcagggactgggctctac 262
Query: 63 aactctgcctttgatgctttgtttggttttgctttgtgttttgtttttctagccatcatg 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aactctgcctttgatgttttgtttggttttgctttgtgttttgtttttctagccatcatg 322
Query: 123 aaattcactctgtagactaagctgacctcgaactcatagagatctgctgcctctgcctcc 182
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 323 aaattcactctgtagactaagctgaccttgaactcatagagatctgctgcctc------c 376
Query: 183 caagggctcagattaaaggcaagtgccagcaccgcctggtaacttttttttttttttgag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caagggctcagattaaaggcaagtgccagcaccgcctggtaacttttttttttttttgag 436
Query: 243 atggtctccatctgttgcaaagggaagtttccttgatgagggatgagttctacgcttaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atggtctccatctgttgcaaagggaagtttccttgatgagggatgagttctacgcttaca 496
Query: 303 tgtgga 308
||||||
Sbjct: 497 tgtgga 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_b02.g1 MSMg01no262_b02.g1 CHROMAT_FILE:
MSMg01no262_b02.g1 PHD_FILE: MSMg01no262_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:37 2005
(633 letters)
>mm_chr1_71386434_71387466
Length = 1033
Score = 1170 bits (605), Expect = 0.0
Identities = 626/633 (98%)
Strand = Plus / Minus
Query: 1 agaattatgctttcttgtctgcatttgcccgtttttaaacaagtagccttctgcttttgg 60
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 637 agaattatgcttttttgtctgcatttgccggtttttaaacaagtagccttctgcttttgg 578
Query: 61 attctaaagtaagcatactgcgagcgtcagacaaaaagctcctcgtgttgtctcagttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 attctaaagtaagcatactgcgagcgtcagacaaaaagctcctcgtgttgtctcagttgc 518
Query: 121 cttaagaaaggcaggtgctagaagcctgggaagaattctcagtgcagagtccgacatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cttaagaaaggcaggtgctagaagcctgggaagaattctcagtgcagagtccgacatact 458
Query: 181 tatataccagcttttgctggccaagagacgtttcctatctacagttacgaattagtgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatataccagcttttgctggccaagagacgtttcctatctacagttacgaattagtgact 398
Query: 241 cttttgcatggttgattgtttctaatgctaatgtttttatgaacaccaggagaggtttac 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 cttttgcatggttgattgtttctaatgctaatgtttttatgaacaccagaagaggtttac 338
Query: 301 tctcttaaaagtctaggccagagaactagacagtgtgttaattacttcttgtggattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tctcttaaaagtctaggccagagaactagacagtgtgttaattacttcttgtggattttt 278
Query: 361 tttaatatttgcattttaaaacttgaggacttcatgtttctatgatcattatctttttta 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 277 tttaatatttgcattttaaaacttgaggatttcatgtttctatgatcattatctttttta 218
Query: 421 atcttcagacttacatcttaaattaataattataaaatgatataattaataataataaca 480
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 217 atcttcagacttacatcttaaattaataataataaaataatataattaataataataaca 158
Query: 481 taatataaagcaaagtgatcaactcaaggtttttctccccagaacacaaaagcatatctg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 157 taatataaagcaaagtgatcaactcaaggtttttttccccagaacacaaaagcatatctg 98
Query: 541 tgctttagaagccaaaaataaacaataattcctactaatgtgacagcaaaacctttttct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tgctttagaagccaaaaataaacaataattcctactaatgtgacagcaaaacctttttct 38
Query: 601 ggtgaatgatgtaattcagttttctatatttcc 633
|||||||||||||||||||||||||||||||||
Sbjct: 37 ggtgaatgatgtaattcagttttctatatttcc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
