BAC Information

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BAC

Clone NameMSMg01-262D17
Chromosome1 (Build37)
Map Location 15,391,469 - 15,391,662
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262D17.T7 (MSMg01no262_d17.b1)MSMg01-262D17.TJ (MSMg01no262_d17.g1)
ACCAG404392AG404393
length750816
length of high quality
(start - end)
371 (38 - 408)194 (80 - 273)
definitionCHROMAT_FILE: MSMg01no262_d17.b1 PHD_FILE: MSMg01no262_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:50 2005CHROMAT_FILE: MSMg01no262_d17.g1 PHD_FILE: MSMg01no262_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAC
CAGACCCTCAAAGAAGACCTGATACCAATTTTCCTCAAAATATTCCATAA
ACTAGAAGGAGAACGCACATTACCTAACTTGTTCTATGAAGCCAAAACTA
CACTGATAACTAAACCACATAAGGATTCAACCAAAAAAGAGAACTTCAAC
CAATATTGCTTATGAACGTGGATACAAAGTTCCTCAGTAAAATTCTTGCA
AACCGAATCCAAGAACGCATCAAAACCATCATTCAACACAATCAAGTAGG
CTTCATACCAGGGATGCAGAATTGGTTTAATATACAAAAACTGATTAACA
TAATTCACTGTATAAACAAACTCAAAGGGAAAAAAATCACATGATCATAT
CTTTACCCCCCCAAAAAGCGTTTGACAAAATACAACACCCCTTCATGTTT
AAAGTATTGGAGAGATCATGAATGCAAGGCCCATATCTAAACATAATAAA
AATAATTTACTGCAAACCAACAGTCAATATCAAATTAAATGGAGACATAG
CTGAAGCAATCCCACTGAAATCAGGGACAAGACAAGGATGTCCACTCTCC
CCATATCTATTTAATATACCACTTGAAGATCTAGCTAGAATACTACGACC
ACTTACAGAGATCAAGGCTAAACTAATTTGCAATACTGAACACAATTATT
AGCTTTTCCTGACCACGTGAAACTATTCATATATGACCCCTATAACTTTG

NCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGCTTTTTGTTATTTGT
TTGTTTCCTGCATGACATTTAACAACAGGCCCCAACTTCATAGGAATGTA
CTGAAAAGGACATATAGGGGCCAAGGCTTTCTCAGTGGAACAGCATTTGG
TTAGCATGTATAATGGGTTTTAATCTTCAAAACTGTGGGGAGAAGTTTAA
AATTGTCAGTTCTTTTCTGTCTCTTGTCGACGTATTACTGTCCCCTGCGA
TTCCCGCAAAATCACACCAGTTTTTTTTTTTACCATCACGACCATTTTAA
CATACGACCCACCTCACTCATATCCCCCCCCCCCCCATATTTAACATTTT
CCTATATGTTTATTTGTTATTTATACCCGNCCCTTTCCCCCAAAAAAAAA
TAAATATATTGTTTAAGACTCCAACTTAAATTAACTCCTCCAAAATCGCC
ACTTATTTATAAATATTATCCCCTCCCCCCACATTTAATTTATTATTAAA
TACCCCGGACACGCGAAGCTATAACAGCCGTATAAAATTATCTCCTTATC
CGTTCATCGCCTATAAAACATTTTTATTACACATTCGCCTCTTCCTCTTT
CTCTTTTTTTCCCTTTTCCCCGCCTCCCCTTCAAATATTTCGCCCAAACA
CCAACAAATCCACTATCTATTCCTATAGATCTAAACTTTAGTTACTTATC
ACTTAATGCTATGTTTCATATATTTCTCCTCTGCTTTTTATATCTATCCG
ATCCTATTATTTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_d17.g1 MSMg01no262_d17.g1 CHROMAT_FILE:
MSMg01no262_d17.g1 PHD_FILE: MSMg01no262_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:50 2005
         (194 letters)



>mm_chr1_15391269_15391862
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgggctttttgttatttgtttgtttcctgcatgacatttaacaacaggccccaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 actgggctttttgttatttgtttgtttcctgcatgacatttaacaacaggccccaacttc 335

                                                                       
Query: 61  ataggaatgtactgaaaaggacatataggggccaaggctttctcagtggaacagcatttg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctaggaatgtactgaaaaggacatataggggccaaggctttctcagtggaacagcatttg 275

                                                                       
Query: 121 gttagcatgtataatgggttttaatcttcaaaactgtggggagaagtttaaaattgtcag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gttagcatgtataatgtgttttaatcttcaaaactgtggggagaagtttaaaattgtcag 215

                         
Query: 181 ttcttttctgtctc 194
           ||||||||||||||
Sbjct: 214 ttcttttctgtctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)