BAC Information

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BAC

Clone NameMSMg01-262E18
Chromosome1 (Build37)
Map Location 15,391,369 - 15,391,662
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E18.T7 (MSMg01no262_e18.b1)MSMg01-262E18.TJ (MSMg01no262_e18.g1)
ACCAG404439AG404440
length751765
length of high quality
(start - end)
603 (40 - 642)294 (70 - 363)
definitionCHROMAT_FILE: MSMg01no262_e18.b1 PHD_FILE: MSMg01no262_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:55 2005CHROMAT_FILE: MSMg01no262_e18.g1 PHD_FILE: MSMg01no262_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ACCATACCCTCAAAGAAGACCTGATACCAATTTTCCTCAAAATATTCCAT
AAACTAGAAGGAGAAGGAACATTACCTAACTTGTTCTATGAAGCCAAAAC
TACACTGATAACTAAACCACATAAGGATTCAACCAAAAAAGAGAACTTCA
ACCAATATTGCTTATGAACGTGGATACAAAGTTCCTCAGTAAAATTCTTG
CAAACCGAATCCAAGAACGCATCAAAACCATCATTCAACACAATCAAGTA
GGCTTCATACCAGTTATGCAGAATTGGTTTAATATACAAAAACTGATTAA
CATAATTCACTGTATAAACAAACTCAAAGGGAAAAAAATCACATGATCAT
ATCTTTACACCCACAAAAAGCGTTTGACAAAATACAACACCCCTTCATGT
TTAAAGTATTGGAGAGATCATGAATGCAAGGCCCATATCTAAACATAATA
AAAATAATTTACTGCAAACCAACAGCCAATATCAAATTAAATGGAGACAT
AGTTGAAGCAATCCCACTGAAATCAGGGACAAGACAAGGATGCCCACTCT
CCCCATATCTATTCAATATAGTACTTGAAGAGCTAGCTAGAATAATAAGA
CAACAAAAAGAGATCTAGGGGATACAAATTGCGAAAACTGAAATAAAGGT
ATCAGTATTTCCAGATGATGTGATAGTATACATAAGTGACCCCAAAAATT
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGGGCTTTTTGTTATTTGTTTGTTTCCTG
CATGACATTTAACAACAGGCCCCAACTTCATAGGAATGTACTGAAAAGGA
CATATAGGGGCCAAGGCTTTCTCAGTGGAACAGCATTTGGTTAGCATGTA
TAATGGGTTTTAATCTTCAAAACTGTGGGGAGAAGTTTAAAATTGTCAGT
TCTTTTCTGTCTCTTGGTGATGTATAAGTGTCTCCTGTGAGTCCGGAATA
TTCTTCTCAGGGATCTGATGGCCATCAGGAGGAACAGGGCTAGGCCCCAC
TTCTCCATGAGTCTGTGGGAGGGGACAGTATCTGCTTACACAGCATAGCT
GGCCTACCCCCCCGGCCATGGACCAACCCTTGGTAAGTTTTCCCTTTTCT
GATTGCTTCAGCCCCACTCACTCACTTTTCTGCTCTCTTCAGTCTCACTT
TAAGGGACCCATCATCTCTGCATAACGTAACTCACCTCCATTATTTCACG
TCACTAGCTTCCGCCCCTTATTCCCCGCTCCCTTGTGCCATTACTTGGTA
CCACCGCACTTTTCCCGTTCAACCAACCTCCATTTGCATAGTCCTCTTCC
CTTCTTGCTTCTTTCCCAAACTTGTTCTATCCACCCCCTATTTTTATCCC
CCATCCCTCTCTTTGATTCTTTTTCCCCCTCTTTTTTTTCCCCTCCCTTT
CCCCCCTTTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e18.g1 MSMg01no262_e18.g1 CHROMAT_FILE:
MSMg01no262_e18.g1 PHD_FILE: MSMg01no262_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:55 2005
         (294 letters)



>mm_chr1_15391169_15391862
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgggctttttgttatttgtttgtttcctgcatgacatttaacaacaggccccaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 actgggctttttgttatttgtttgtttcctgcatgacatttaacaacaggccccaacttc 435

                                                                       
Query: 61  ataggaatgtactgaaaaggacatataggggccaaggctttctcagtggaacagcatttg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctaggaatgtactgaaaaggacatataggggccaaggctttctcagtggaacagcatttg 375

                                                                       
Query: 121 gttagcatgtataatgggttttaatcttcaaaactgtggggagaagtttaaaattgtcag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gttagcatgtataatgtgttttaatcttcaaaactgtggggagaagtttaaaattgtcag 315

                                                                       
Query: 181 ttcttttctgtctcttggtgatgtataagtgtctcctgtgagtccggaatattcttctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttcttttctgtctcttggtgatgtataagtgtctcctgtgagtccggaatattcttctca 255

                                                                 
Query: 241 gggatctgatggccatcaggaggaacagggctaggccccacttctccatgagtc 294
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gggacctgagggccatcaggaggaacagggctaggccccacttctccatgagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)