Query= MSMg01no262_f22.b1 MSMg01no262_f22.b1 CHROMAT_FILE:
MSMg01no262_f22.b1 PHD_FILE: MSMg01no262_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:00 2005
(653 letters)
>mm_chr1_131548600_131549653
Length = 1054
Score = 1218 bits (630), Expect = 0.0
Identities = 648/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 1 attcattcactctgcctttcatgaaacacgttaaaaactaaaattacaaccctgccattt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 854 attcattcactctgcctttcataaaacacgttaaaaactaaaattacaaccctgccattt 795
Query: 61 cccaagcccttacacacttcatgtccatttggaacatattttatcttccagatagtggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 cccaagcccttacacacttcatgtccatttggaacatattttatcttccagatagtggca 735
Query: 121 ttttcccccaagacactttcattttcttccaattaagtttcaaaaactctactgttaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttttcccccaagacactttcattttcttccaattaagtttcaaaaactctactgttaaca 675
Query: 181 ccactcttaccagaggctccatattacaaggttctcagatcagcaagtgcttatgactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccactcttaccagaggctccatattacaaggttctcagatcagcaagtgcttatgactaa 615
Query: 241 gaaaaaaaataagacttttgaaaatgagttttaaataatcgttttccatgatggaaatat 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaaaaaaaatgagacttttgaaaatgagttttaaataatcgttttccatgatggaaatat 555
Query: 301 atatgtaccatgaagacattaaacaagaatagcatacaagttgagttagagtcttgttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatgtaccatgaagacattaaacaagaatagcatacaagttgagttagagtcttgttgt 495
Query: 361 cccatacgtaagaacagatatttgctgtgccctgtttagcctgtaaacttcaaaccagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cccatacgtaagaacagatatttgctgtgccctgtttagcctgtaaacttcaaaccagcc 435
Query: 421 taaatcttacaagtacccagtgagcatttacaagttatcagtataacttgattaaatatt 480
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taattcttacaagtacacagtgagcatttacaagttatcagtataacttgattaaatatt 375
Query: 481 tccaattctaatgcagaaaatgagttttaaaaggtagcatttaccagcaaagatttgata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tccaattctaatgcagaaaatgagttttaaaaggtagcatttaccagcaaagatttgata 315
Query: 541 cacaattgaaagagtt-aaaaaaaaaaaaagctgggctggttatgtagatcatctgttag 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cacaattgaaagagttaaaaaaaaaaaaaagctgggctggttatgtagatcatctgttag 255
Query: 600 aatgcttactatcatacagtcctgcattccatgaccagcatggtataaattggg 653
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatgcttgctatcatacagtcctgcattccatgaccagcatggtataaattggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_f22.g1 MSMg01no262_f22.g1 CHROMAT_FILE:
MSMg01no262_f22.g1 PHD_FILE: MSMg01no262_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:00 2005
(587 letters)
>mm_chr1_131503367_131504355
Length = 989
Score = 880 bits (455), Expect = 0.0
Identities = 561/623 (90%), Gaps = 46/623 (7%)
Strand = Plus / Plus
Query: 1 ctaactaatatgcagaaggctctaggttatatgtctagtatcataaaactgaaaatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctaactaatatgcagaaggctctaggttatatgtctagtatcataaaactgaaaatagtt 236
Query: 61 actctaatcagcatttatgagcca------------------------------acacac 90
|||||||||||||||||||||||| ||||||
Sbjct: 237 actctaatcagcatttatgagccaacacacacacacacacacacacacacacacacacac 296
Query: 91 acacacacacacacacacacacacacacctctctacacaaagctagggactgggcaaact 150
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 297 acacacacacacacacacacacacacacctctatacacaaagcta------gggcaaact 350
Query: 151 gaaaactaaggactgaggaagactctgagaaaatggtctggtcattgcgttgtcagctga 210
||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 351 gaaaactaaggaccgaggaagactctgggaaaatggtctggtcattgtgttgtcagctga 410
Query: 211 tggtgatgtttacctcctgatgagacccacctgtaatcaaagagcttttaatttgtgatg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tggtgatgtttacctcctgatgagacccacctgtaatcaaagagcttttaatttgtgatg 470
Query: 271 gaagttgcaaccataactcctagtgacagtgctgtgagaaagttgacttttttccatcgt 330
||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct: 471 gaagtcgcaaccataattcctagtgacagtgctgtgagaaagttgaccttgttccatcgt 530
Query: 331 gaagaactgagacaaaaaaaaaaaaagaaaaa-----gaaatcagtacttgtaataagat 385
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 531 gaagaactgagacaaaaaaaaaaaaaaaaaaaaaaaagaaatcagtacttgtaataagat 590
Query: 386 gagacaatgtagtgaacaagaataaaagttgaaaaagtttactcatatatgcaatatagt 445
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct: 591 gagacaatgtagtgaacaagaataaaagttgaaaaaatttactcatatatgcaatacaat 650
Query: 446 agtcttgtatttaacaaactgtgtggtatct-acaaaatagaaataaagaaatcatgaac 504
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 651 agtcttgtaattaacaaactgtgtggtatctta-aaaatagaaataaagaaatcatgaac 709
Query: 505 agtaaaactattttttggagttcttgttgttgtttatgttgtttactgattttcaaatca 564
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 710 agtaaaactatattttggagttcttgttgtt---tatgttgtttactgattttcaaatca 766
Query: 565 gtataagcttgaaagaactgtgg 587
||| |||||||||| ||||||||
Sbjct: 767 gtaaaagcttgaaataactgtgg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 989
Length adjustment: 10
Effective length of query: 577
Effective length of database: 979
Effective search space: 564883
Effective search space used: 564883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
