Query= MSMg01no262_g06.b1 MSMg01no262_g06.b1 CHROMAT_FILE:
MSMg01no262_g06.b1 PHD_FILE: MSMg01no262_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
(275 letters)
>mm_chr1_66984750_66985424
Length = 675
Score = 485 bits (251), Expect = e-142
Identities = 266/275 (96%), Gaps = 8/275 (2%)
Strand = Plus / Plus
Query: 5 gaattcttactgttttca----tagacttctctgctttgagaattgtctttctcctagtg 60
|||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactg----cagggatagacttctctgctttgagaattgtctttctcctagtg 260
Query: 61 actgtgaagtttggttcactgactgaagataaattttctggctcctagattgaattactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtgaagtttggttcactgactgaagataaattttctggctcctagattgaattactt 320
Query: 121 tataggacaaagtattacaatgcacttaaagaaaatagagaactaatttatgttaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggacaaagtattacaatgcacttaaagaaaatagagaactaatttatgttaaattt 380
Query: 181 tagtatcttagaagaagcggcgtcattaaagagcatgtgggaagtggatggtgttgaata 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtatcttagaagaagcggtgtcattaaagagcatgtgggaagtggatggtgttgaata 440
Query: 241 ctaaggggaatgtcctagggaggagcctgcaccac 275
|||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaggggaatgtcctagggaggagcctgcaccac 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no262_g06.g1 MSMg01no262_g06.g1 CHROMAT_FILE:
MSMg01no262_g06.g1 PHD_FILE: MSMg01no262_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
(340 letters)
>mm_chr1_67110004_67110743
Length = 740
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%)
Strand = Plus / Minus
Query: 1 cacttttatgatattagaattgaagagtctgtagatgatctgcttaggcagaaaactgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cacttttatgatattagaattgaagagtctgtagatgatctgcttaggcagaaaactgag 481
Query: 61 tgaagcatcggaagatttttccttggtgaggcggtgcctcacacagattgaactctctaa 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgaagcatcggaagatttttcattggtgaggcggtgcctcacacagattgaactctctaa 421
Query: 121 ctggagtattacactgatatgaatatatctgatgaaaatagttgaaaccagaggccttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctggagtattacactgatatgaatatatctgatgaaaatagttgaaaccagaggccttca 361
Query: 181 gcaagtgcataccactcaaggtttagtgttgtctctggtccttctcattagggaactgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcaagtgcataccactcaaggtttagtgttgtctctggtccttctcattagggaactgcc 301
Query: 241 aatggtccacggcattgtgaatccaggaggagcttctctgacagcccttctaagttgctc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aatggcccacggcattgtgaatccaggaggagcttctctgacagcccttctaagttgctc 241
Query: 301 cactgttctctttacccattaggtttagactacagtgaga 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cactgttctctttacccattaggtttagactacagtgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|