BAC Information

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BAC

Clone NameMSMg01-262G06
Chromosome1 (Build37)
Map Location 66,984,954 - 67,110,543
singlet/doubletdoublet
Overlap geneMyl1, LOC100043192, Lancl1
Upstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
Downstream geneCps1, Kif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262G06.T7 (MSMg01no262_g06.b1)MSMg01-262G06.TJ (MSMg01no262_g06.g1)
ACCAG404503AG404504
length764740
length of high quality
(start - end)
275 (42 - 316)340 (73 - 412)
definitionCHROMAT_FILE: MSMg01no262_g06.b1 PHD_FILE: MSMg01no262_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:02 2005CHROMAT_FILE: MSMg01no262_g06.g1 PHD_FILE: MSMg01no262_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,984,954 - 66,985,224)(67,110,204 - 67,110,543)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTACTGTTTTCATAGACTTCTCTGCTTTGAGAATTGTCTTTCTCCTAGT
GACTGTGAAGTTTGGTTCACTGACTGAAGATAAATTTTCTGGCTCCTAGA
TTGAATTACTTTATAGGACAAAGTATTACAATGCACTTAAAGAAAATAGA
GAACTAATTTATGTTAAATTTTAGTATCTTAGAAGAAGCGGCGTCATTAA
AGAGCATGTGGGAAGTGGATGGTGTTGAATACTAAGGGGAATGTCCTAGG
GAGGAGCCTGCACCACATTGATCAAAGCTCTCTTCATTTCAGGTGGATGC
ACATATGCCAGTGACTGAATCTAAGACAAGAAGCTGCTGTCATCAGAGCC
AGTTTCCTTCTCCCCCCCCACTGTTGGAAATTCTCTGCCTCCTTGCCTGG
CATAGAGATCAGAGCTAAATACATATTATCCTTTATGGAAATAATCTAAA
CTAACTTATCTTATAGGGTTTTTAACCTCCTCCATATCAGGCCTTTACAT
TTAATTTCTTGACCCACTACCATTGTCGTGCTCCCCAATCATACCCTCTT
ATGTGTCTACTTATACGATTCTTTGTATCCCACCTCCCCAATTTCTTTCC
GCAGCCCACCCTTAATTTTTCTCTTTCCCCTCTCCCTTATTATACACATT
GCCTCCTAATCTCCCCCCCACTGTTTCTCCTTGTTACACTTAACTCCTCT
AACTCACTCCTATN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTTTTATGATATTAGAATTGAAGAGT
CTGTAGATGATCTGCTTAGGCAGAAAACTGAGTGAAGCATCGGAAGATTT
TTCCTTGGTGAGGCGGTGCCTCACACAGATTGAACTCTCTAACTGGAGTA
TTACACTGATATGAATATATCTGATGAAAATAGTTGAAACCAGAGGCCTT
CAGCAAGTGCATACCACTCAAGGTTTAGTGTTGTCTCTGGTCCTTCTCAT
TAGGGAACTGCCAATGGTCCACGGCATTGTGAATCCAGGAGGAGCTTCTC
TGACAGCCCTTCTAAGTTGCTCCACTGTTCTCTTTACCCATTAGGTTTAG
ACTACAGTGAGAGCCCCACGCTTTGTTCTAACTTTTCAGTTTTGCTCTCT
TTTTTTTCTGACTGTAGAACTCTCAGAGCCTGGGTAAGTGAACAAGTGTC
TTTATTGTCGGAGCCCCATTGGCAAAACTGAATTTCCCTAGTCATCATTC
AGTGAAAGAAATACTGTTGCCCATTTTCCTCATGCCCATATCGTATAATT
AATATTAAGACCCTCCTCTCCTACGCAGAGCATAGGGCGGACTCTTCTGG
CCTCTTGTTGGCTAAAGGGCCTACCCCATTTTTAGCGCCATCCGTTCCTA
CTTTACATATCCCATGTTTGCCCCTGTTCCCGACTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_g06.b1 MSMg01no262_g06.b1 CHROMAT_FILE:
MSMg01no262_g06.b1 PHD_FILE: MSMg01no262_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
         (275 letters)



>mm_chr1_66984750_66985424
          Length = 675

 Score =  485 bits (251), Expect = e-142
 Identities = 266/275 (96%), Gaps = 8/275 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttactgttttca----tagacttctctgctttgagaattgtctttctcctagtg 60
           ||||||||||||    ||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactg----cagggatagacttctctgctttgagaattgtctttctcctagtg 260

                                                                       
Query: 61  actgtgaagtttggttcactgactgaagataaattttctggctcctagattgaattactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtgaagtttggttcactgactgaagataaattttctggctcctagattgaattactt 320

                                                                       
Query: 121 tataggacaaagtattacaatgcacttaaagaaaatagagaactaatttatgttaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggacaaagtattacaatgcacttaaagaaaatagagaactaatttatgttaaattt 380

                                                                       
Query: 181 tagtatcttagaagaagcggcgtcattaaagagcatgtgggaagtggatggtgttgaata 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtatcttagaagaagcggtgtcattaaagagcatgtgggaagtggatggtgttgaata 440

                                              
Query: 241 ctaaggggaatgtcctagggaggagcctgcaccac 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaggggaatgtcctagggaggagcctgcaccac 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no262_g06.g1 MSMg01no262_g06.g1 CHROMAT_FILE:
MSMg01no262_g06.g1 PHD_FILE: MSMg01no262_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
         (340 letters)



>mm_chr1_67110004_67110743
          Length = 740

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttttatgatattagaattgaagagtctgtagatgatctgcttaggcagaaaactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cacttttatgatattagaattgaagagtctgtagatgatctgcttaggcagaaaactgag 481

                                                                       
Query: 61  tgaagcatcggaagatttttccttggtgaggcggtgcctcacacagattgaactctctaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgaagcatcggaagatttttcattggtgaggcggtgcctcacacagattgaactctctaa 421

                                                                       
Query: 121 ctggagtattacactgatatgaatatatctgatgaaaatagttgaaaccagaggccttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctggagtattacactgatatgaatatatctgatgaaaatagttgaaaccagaggccttca 361

                                                                       
Query: 181 gcaagtgcataccactcaaggtttagtgttgtctctggtccttctcattagggaactgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcaagtgcataccactcaaggtttagtgttgtctctggtccttctcattagggaactgcc 301

                                                                       
Query: 241 aatggtccacggcattgtgaatccaggaggagcttctctgacagcccttctaagttgctc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aatggcccacggcattgtgaatccaggaggagcttctctgacagcccttctaagttgctc 241

                                                   
Query: 301 cactgttctctttacccattaggtttagactacagtgaga 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cactgttctctttacccattaggtttagactacagtgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)