BAC Information

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BAC

Clone NameMSMg01-262G22
Chromosome1 (Build37)
Map Location 111,069,025 - 111,069,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508, Cdh7
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262G22.T7 (MSMg01no262_g22.b1)MSMg01-262G22.TJ (MSMg01no262_g22.g1)
ACCAG404533AG404534
length762794
length of high quality
(start - end)		527 (38 - 564)325 (67 - 391)
definitionCHROMAT_FILE: MSMg01no262_g22.b1 PHD_FILE: MSMg01no262_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:05 2005CHROMAT_FILE: MSMg01no262_g22.g1 PHD_FILE: MSMg01no262_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCAT
TAGCCCCTCCCCCAGTTATGTTGGGATTTTGGCTTGTTTAATCTTTCATG
TATTCTATCTGCTATGTATTTGTGGGTTCCTGTATATTATAGTCCCATCA
TGTCTGGCAAATACTGTTTGGCAGTATACATCCACTACATTTTGTTCTTA
TTATCGTCTTTGCTTCTAGGATAACCCTGTATACTTTGACTAAGATTGTA
AAATATAGATGTATCACTTGGAGCTAAGAAATCTGTAGTTAATAAAAGAT
AAATAGATCACAGAGGAAGCCATGCTCCTCTAATCTTTGCAGGAGGTTAC
CTAACACTGAATTTTGGGCGAAATATCTCTGGGACCCATAGATGACCCTG
GTGATGAAGGCCCCTGGCAAAATCTGGAACATGGTTTCTGGAAAGCATGG
ACAGTCCTAGTAGGGGGAGCTGAGTTTTCTCATCTTGTATTGGAGGTCCC
TGGGCAATGTAGGTCTAATAGTGGAAGACAGAGTGCCTTGATGCCCTCTA
TGTGAGTAAATATGTAGTGCTTGACATGCGCATGGCAATATCAAGAACCC
GAATGCTTCAAATCCACAGGAGTCCTATGTTATATGGACCTGACACTTTT
CTCTATAACCATTCCCTCTTGATTTTCTAGGAGTCTACCAACAATTACAG
TATCTTATGTATGTATAGCTTGTGAACAGTCTTCTGCCAATAACCTCGAT
ACCAACCCTGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTCCATTTAATTTGATGTTGGCTATCAGCTT
GCTATAAATTGCACTTATTATGATTGAGTATGTGCTTTGCATCTCTGAAC
AACCCAGAATTTTTATCATGAAGAGTTTATGGGGTTTTTGTCCAAGAATT
TATCAGCATTTAATGAGATAATTTTGAGATTTTTTTTTCTTTCAGTTTGT
TAATGTAGTTGATTACATTGACAGATTTTAATTTGTCGAACCATCTCTAC
ATCTCTGGGATGAATCTTACTTGATTACATTAAATGGTCTTTTTATTGGG
TTCTTGGATTTGGTTTGTGAGTATTATATGGAGTATTTTTTCCCTTTTTT
CCCTTTTTTCCCCCCCCCTTCTTCCTCCTTTCCCTCCTTTCTCTCTTCTC
TCGTCCTTCCCCCCCTTTTTTTCCTTTCCTTTTCCCCCCCTTTTTCTTCC
CTTTCCCCTCCCCTCTTTATCCCCCTTTTCCTTTTCCTATCCCTCCCCTT
TTACCCCTTTTTTTCCCTCCCCTTCACTCTCCCCCTCTTTATTTCCCCTA
TCCCTTCTTTTTCCACTACCCCTTATATTTCCCCTTATTTTCCCCTTTTT
TTCCCCCCTATTTTACCATCTCTTCCATCCCCTGTTTACTTTATACACAA
CCTTTTTTTCTATTCCCTCTCTTTTTTTTACCCACTTCCCCCCTATATCT
TTTTTCCCCCCCATTTTTTCCCCCCCCTTTCCCCCCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_g22.b1 MSMg01no262_g22.b1 CHROMAT_FILE:
MSMg01no262_g22.b1 PHD_FILE: MSMg01no262_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:05 2005
         (527 letters)



>mm_chr1_111068821_111069747
          Length = 927

 Score =  926 bits (479), Expect = 0.0
 Identities = 512/527 (97%), Gaps = 8/527 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcattagcccctcccccagttatgttgggattttggcttgtttaatctttcatgt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcattagcccctctcccagttatgttgggattttggcttgtttaatctttcatgt 264

                                                                       
Query: 65  attctatctgctatgtatttgtgggttcctgtatattatagtcccatcatgtctggcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attctatctgctatgtatttgtgggttcctgtatattatagtcccatcatgtctggcaaa 324

                                                                       
Query: 125 tactgtttggcagtatacatccactacattttgttcttattatcgtctttgcttctagga 184
           ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 325 tactgtttggcagcatacatccactgcattttgttcttattatcgtccttgcttctagga 384

                                                                       
Query: 185 taaccctgtatactttgactaagattgtaaaatatagatgtatcacttggagctaagaaa 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaccctgtagactttgactaagattgtaaaatatagatgtatcacttggagctaagaaa 444

                                                                       
Query: 245 tctgtagttaataaaagataaatagatcacagaggaagccatgctcctctaatctttgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgtagttaataaaagataaatagatcacagaggaagccatgctcctctaatctttgca 504

                                                                       
Query: 305 ggaggttacctaacactgaattttgggcgaaatatctctgggacccatagatgaccctgg 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ggaggttacctaacactgaattttgggcgaaatatttctgggacccatagatgaccctgg 564

                                                                       
Query: 365 tgatgaaggcccct----ggcaaaatctggaacatggtttctggaaagcatggacagtcc 420
           |||||||||    |    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatgaagg----tttttggcaaaatctggaacatggtttctggaaagcatggacagtcc 620

                                                                       
Query: 421 tagtagggggagctgagttttctcatcttgtattggaggtccctgggcaatgtaggtcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtagggggagctgagttttctcatcttgtattggaggtccctgggcaatgtaggtcta 680

                                                          
Query: 481 atagtggaagacagagtgccttgatgccctctatgtgagtaaatatg 527
           | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagtggaagacagagtgccttgatgccctctatgtgagtaaatatg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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