BAC Information

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BAC

Clone NameMSMg01-262M04
Chromosome1 (Build37)
Map Location 81,277,979 - 81,278,298
singlet/doubletsinglet
Overlap genenone
Upstream geneCul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262M04.T7 (MSMg01no262_m04.b1)MSMg01-262M04.TJ (MSMg01no262_m04.g1)
ACCAG404772AG404773
length761740
length of high quality
(start - end)
327 (69 - 395)659 (73 - 731)
definitionCHROMAT_FILE: MSMg01no262_m04.b1 PHD_FILE: MSMg01no262_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:29 2005CHROMAT_FILE: MSMg01no262_m04.g1 PHD_FILE: MSMg01no262_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGTAGTTTCACATGGCCACATTCCCATGTGGAGTCTTAGGAGAGTC
ATGCAAGCTATATCCCTAGTCGGTTCCACTATGGAAAACTGTAGTTTCTG
TCTCCAGAATTTGTGTTAATCAGAGAAATGGTATTATTTGTGCTTCTCCT
AATATTGTCCAGAAAGCATTGGGAAATAATCAAAAAACAAAAACAAAAAC
AAAAAAATGTGTGTTAAACATTTTAAGTGGTCAGAGTGTTTCCTAGTTGA
GTTTGAATGGAAATAAGCAGGTATATAAAATGCAAAAGGCTAATTACAAA
ATAATATAAGATAATTACTCTCATAACCTAAGACAAGAGCCAAATCACAA
AAGAACTCGCAAAGCACCCCCAACAAAATGAATATTGGTGTCCTTATCTG
AACTCTCATCTGTAGCCTAAGAAGGCAGTTAGAGGTATAATCAGAAGCCA
GTATTAGAAAAGATTTTAGATAGACTTTATATGCATGGTTGCGTTCGATT
CGTGCCTGTTGTTGGAAATTTGCATGTATGAAATTTGCTGTGATCTATAT
GCCTGATTCACTTCGTGATTGTTTTTGATTTCCTCCCCTCTTTATTTCCT
CCTTTACTTCTATTTTTTTTTTCACCCCTTCCTACATTTTTCCTTTTCTA
ATTTAATCCCCCCCCTCCTCCCACTCCCTTTTTCACCTTCCATACTTCTC
TCTATTCTTTT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGCAGTTGTGTCAGCATTTATAAGAC
ATGAATAAGTGAAAAACAGACAAAGTCCAAAGACAGAGAGGAGAGATGGT
CATGAATTCTCACCCCTAACTGGGGAACTATCAGCAATTGATAACTTCTA
GGAGATGGAAAAGGAGAGGAAGGCTCTATTATTTTCTTAAGGGTATCATA
CTAGGTAAGACAACCATACTCCAATGGAAGGCTACATAACCAAGAGAATA
TGAGCGGCACCAACTGTATTTGGGGAATACCCAAGATATAATTCACAGAC
CACATGAAGCTCAAGAAGAAGGAAGACCACAGTGCAGATACTTCGGTCCT
TCTTAGTAGTGGGATCAACATACTCATGGGACCAGATACAGAGACAAAGT
TTGAAGCAGAAACTGAAGGAAAGGCCACCCAGTAACTATCCTACCTGGTG
ATACAGCCCATATACAGTCACCAAACCCAGACACTATTGTGGATGCCAAC
AAGTGCTTGCTGACAAGAGCCTGATTTAGCTGTCTCCTGAGAAACTCTGC
CAGTCCCTGGCCAATTCAAAAGTGGATTCTCACAGCCATACATTGGACTG
AGCAAAGGGTCCTCAATGAAGGAGCAAGAGAAAGGCCCCAAGGAGCTGAA
GGGGTTTGCAGCCCCATAGGAGGAACAACAGTATGAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_m04.b1 MSMg01no262_m04.b1 CHROMAT_FILE:
MSMg01no262_m04.b1 PHD_FILE: MSMg01no262_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:29 2005
         (327 letters)



>mm_chr1_81277779_81278504
          Length = 726

 Score =  545 bits (282), Expect = e-159
 Identities = 314/326 (96%), Gaps = 6/326 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccacattcccatgtggagtcttaggagagtcatgcaagctatatccctagtcggttcca 60
           |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 201 gccaaattcccatgtggagtcttaggagagtcgtgcaagctatatccctagt-ggttcca 259

                                                                       
Query: 61  ctatggaaaactgtagtttctgtctccagaatttgtgttaatcagagaaatggtattatt 120
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 260 ctatggaaaactgtagtttctttcgccagaatttgtgttaatcagagaaatggtattatt 319

                                                                       
Query: 121 tgtgcttctcctaatattgtccagaaagcattgggaaataatcaaaaaacaaaaacaaaa 180
           |||||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||| 
Sbjct: 320 tgtgcttctcctgatattgtccagaaagcattggaaaataatcaaaaaacaaa--caaa- 376

                                                                       
Query: 181 acaaaaaaatgtgtgttaaacattttaagtggtcagagtgtttcctagttgagtttgaat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 -caaaaaaatgtgtgttaaacattttaagtggtcagagtgtttcctagttgagtttgaat 435

                                                                       
Query: 241 ggaaataagcaggtatataaaatgcaaaaggctaattacaaaataatataagataattac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggaaataagcagg-atataaaatgcaaaaggctaattacaaaataatataagataattac 494

                                     
Query: 301 tctcataacctaagacaagagccaaa 326
           ||||||||||||||||||||||||||
Sbjct: 495 tctcataacctaagacaagagccaaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 726
Length adjustment: 9
Effective length of query: 318
Effective length of database: 717
Effective search space:   228006
Effective search space used:   228006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)