Query= MSMg01no262_m14.b1 MSMg01no262_m14.b1 CHROMAT_FILE:
MSMg01no262_m14.b1 PHD_FILE: MSMg01no262_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:31 2005
(622 letters)
>mm_chr1_160072762_160073781
Length = 1020
Score = 998 bits (516), Expect = 0.0
Identities = 586/618 (94%), Gaps = 16/618 (2%)
Strand = Plus / Minus
Query: 5 gaattccagcaatacccacatcccctcaaccccagcagagagcatttgaggcctgtgtgg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gaattccagcaataaacacatcccctcaaccccagcagagagcatttgaggcctgtgtgg 911
Query: 65 cacagagatgggctacttctcataagacctagggaggaccagaccagcagccttcctgca 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 910 cacagagatgggctacttctcataagacctagggaggaccagaccagcaggcttcctgca 851
Query: 125 ggccagcttggccaggcaggagaaagagaagaaggatcagctatgaaggatgaacatgag 184
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 850 ggccagcttggccaggcaggagaaagagaa--------------gaaggatgaacatgag 805
Query: 185 tgtgatgaagaggaatggggtgaaatacacaaatgctgtggatccatacatcaggggtcc 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 804 tgtgatgaagaggaatggggtgaaatacacaaatgctgtggatccgtacatca-gggtcc 746
Query: 245 ttgagattcttagcagactcgggctctgcccttgttctcacgcattcagatttcattgaa 304
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgagatccttagcagacccgggctctgcccttgttctcacgcattcagatttcattgaa 686
Query: 305 agggattcaacataggcacgaggatttcaaatgtgactcctagactgggaatcactattc 364
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct: 685 agggattcaacataggcacgagggtttcaaacgtgactccgagactgggaatcactattc 626
Query: 365 taacaccattgaggggaaaggagctgccccacccctcagcctgaagcagctggtacaatg 424
||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct: 625 taataaaattgaggggaaaggagctgcccca-ccctcaccctgaagcagctggtacaaag 567
Query: 425 gtagagtagagcaggactaattcccaccttctaagaaatgcatcagagaaactatggtgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtagagtagagcaggactaattcccaccttctaagaaatgcatcagagaaactatggtgc 507
Query: 485 cttttgcactgaggatagaaggacctgggctggggctgggacttttcaggaccacgagcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttttgcactgaggatagaaggacctgggctggggctgggacttttcaggaccacgagcc 447
Query: 545 agggatctgaaaatagtcttagaaactgcaaaggagccataagaaagactgacgatagag 604
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 446 agggatctgaaaatagtcttagaaactgcaaaggagccataagaaagattgatgatagag 387
Query: 605 ggactttttgaagttatg 622
||||||||||||||||||
Sbjct: 386 ggactttttgaagttatg 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1020
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1010
Effective search space: 618120
Effective search space used: 618120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m14.g1 MSMg01no262_m14.g1 CHROMAT_FILE:
MSMg01no262_m14.g1 PHD_FILE: MSMg01no262_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:31 2005
(528 letters)
>mm_chr1_159924318_159925244
Length = 927
Score = 953 bits (493), Expect = 0.0
Identities = 520/529 (98%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 1 ttctcagtgaatcacatttgaagtcatgtgatgtcagcctgttcccaaatgactgtgtta 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcagtgaatcacatttgaaggcatgtgatgtcagcctgttcccaaatgactgtgtta 260
Query: 61 gttttaatgacccggatagaagtgtttcccaagtacttccacttaaaaatattcctcttt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gttttaatgacccggatagaagtgtttcccaagtacctccacttaaaaatattcctcttt 320
Query: 121 gtaattaataaatattttttgccaaatagcttaaaatacataaacacacagctctcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaattaataaatattttttgccaaatagcttaaaatacataaacacacagctctcattc 380
Query: 181 aactttcaaactgtttttaacagtcagtggtgatttcatcagtctttccatgtttatact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttcaaactgtttttaacagtcagtggtgatttcatcagtctttccatgtttatact 440
Query: 241 tggattctagtgtgagaaaatttttttcttcctgtaggtgtcagtaatctttccaatatt 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tggattctagtgtgagaaaatttttt-cttcctgtaggtgtcagtaatctttccaatatt 499
Query: 301 aaagtgaagtgtctgagataagtagcttatagagagagaac-gctaattgtggctcagtc 359
||||| |||| |||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 500 aaagtaaagtctctgagataagtagcttatagagagaga-ctgttaattgtggctcagtc 558
Query: 360 tagaggtttcagtctgtgattgacccattgccttagttccatcatgaggcagcctctcag 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagaggtttcagtctgcgattgacccattgccttagttccatcatgaggcagcctctcag 618
Query: 420 agttggaccaggtgggtacaacaaaacttcataatgcagagaataaataaaagtaggaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agttggaccaggtgggtacaacaaaacttcataatgcagagaataaataaaagtaggaat 678
Query: 480 gagccaggatgttatagtctccgctggagttaagcctcccatgactcaa 528
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gagccaggatgttatagtctccgctggagttaagcctcccatgactcaa 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space: 475006
Effective search space used: 475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
