XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAATATGCCCACACAGCAAGTCTTGGAAAAATATCTATCTATCCATCTGT
CTATCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCCATCAATCCATCTATCTATCTATCTAC
CCATCTATCTTTTATTTATCTCATCTATGCATGCATCCATCTATCTACCT
AGTCATCCTATATCAATCATCTATCTACCTATCATTTATCCATCTATCAT
CTATCAATCTTCCTTTTACCTAGTTATCTATCTATGCATCACCTTAGAAT
TTATATTACAAATGTAAAATGAATTGTGCATATGAACTTTTGGATTTTAT
AGCTGTTACCAAAAAATATATTTATTTGTTTCAAAAATGGGCCATGCATT
TGTTTTGAAAATGAGTTAGTTAATAAGCTCCAAAATTATATGTGTTGAGT
ATAATTTTTAATTTTCCAATGCAAAAATTAACCTTTGAAGGGAAAAACAT
ATCAAAAAGAAACATAAAATATACATCTAATATTCAATTATACAGTACAT
ACATATATAAAGAGATTATATAAAATCCAAAATCCAAAATATACAACATA
AAAATATTCCTAGTTATAAACAATTAGAACTAACAGTATTTCTGAATCAT
TTCCAGATCATTCAACTACCATTTACTAAATACTAAAG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCGGTAGCTTTAGAGGGATGGATGGAGG
GAGGGAAGGAGTTTTTCCCCCCTCCTTTCTTTCCTTCTTCCCCTTCTTCT
TCTCTTCCTTCCCTTTCCCCCTCTCTTTTCTTTTTCCTTCTTTCTTTTCC
CTCCCCCTTCTTTTTTTTTCCCCCCCCTTCTTTTCTTCTTCTTCTCCCTC
CTCTCTCCTTCTCCCCTCTTCTTTCTTCCCTCTTCTCTTCTCTTTCTCTT
CTTTTTCTCCTTCTCCCCCTTTTCTTCTCTTTTTTTTTTCTCCTTCTCTT
TTCCCTCCTTTTTTTCTCCTTTTCTCTTTTTTCTCCCCCCCCCCCCCCCT
TTTTTTTCTCTTTTTTTTTCCCTTTTCTTTTTTTTTTTTCCCCCCCCTTT
TTTTTACATCCTTTCTCCTCCGCTTTTGCCCTACCTTTCCTCCCCCTTCT
TTTTCCCTCTCCTTTCCCCCCTTTTTTCCTTTCCTTCTCCCCCTCCCTTC
TATACCCCCCCCCGTTTCGTCTCTTTTTACCCCCCCCTCCTTTTTCCTTT
TCTTTTCCTTCTTCCTCTTTCTCTCCCCCTCCTTTTTTCCCTCCCCCTTT
TTTCTCTTCTCCTTCCCCCTATCTCCCCCCCCCTTTTTTTTCCCTTTTCT
TTCCTCCCCTCTTGTCCCTTTTTTCCCTTCCCTTCTTTTCCCTTTTTCTT
CTTTCCTCTTTTTTCTTTCCCCCCTTTCTTTTTTCCACTCCTCCCCTCCT
CTCTCTTTTTTCCCTCGCTTTTTCTTCCCCCTCTCTTCCCCCCTTTCTCT
G

Query= MSMg01no262_o14.b1 MSMg01no262_o14.b1 CHROMAT_FILE:
MSMg01no262_o14.b1 PHD_FILE: MSMg01no262_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:40 2005
         (698 letters)



>mm_chr1_11113656_11114754
          Length = 1099

 Score = 1021 bits (528), Expect = 0.0
 Identities = 581/600 (96%), Gaps = 5/600 (0%)
 Strand = Plus / Minus

                                                                        
Query: 104  tctatctatctatctatctatctatctatccatc-a---atccatctatctatctatcta 159
            |||||||||||||||||||||| ||| ||||||| |   ||| |||||||||||||||||
Sbjct: 1095 tctatctatctatctatctatccatcaatccatctatctatctatctatctatctatcta 1036

                                                                        
Query: 160  cccatctatcttttatttatctcatctatgcatgcatccatctatctacctagtcatcct 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 cccatctatcttttatttatctcatctatgcatgcatccatctatctacctagtcatcct 976

                                                                        
Query: 220  atatcaatcatctatctacctatcatttatccatctatcatctatcaatcttccttttac 279
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 975  atatcaatcatctatctacctatcatttatccacctatcatctatcaatcttccttttac 916

                                                                        
Query: 280  ctagttatctatctatgcatcaccttagaatttatattacaaatgtaaaatgaattgtgc 339
            |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 915  ctagttatctatctatgcatcaccttagaattgatattacaagtgtaaaatgaattgtgc 856

                                                                        
Query: 340  atatgaacttttggattttatagctgttaccaaaaaatatatttatttgtttcaaaaatg 399
            |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 855  atatgaacttatggattttatagctgttactaaaagatatatttatttgtttcaaaaatg 796

                                                                        
Query: 400  ggccatgcatttgttttgaaaatgagttagttaataagctccaaaattatatgtgttgag 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  ggccatgcatttgttttgaaaatgagttagttaataagctccaaaattatatgtgttgag 736

                                                                        
Query: 460  tataatttttaattttccaatgc-aaaaattaacctttgaagggaaaaacatatcaaaaa 518
            ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 735  tataatttttaattttccaatgcaaaaaattaacttttgaagggaaaaacatatcaaaaa 676

                                                                        
Query: 519  gaaacataaaatatacatctaatattcaattatacagtacatacatatataaagagatta 578
            ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct: 675  gaaacataaaatatacatctaatattcaattattcagtatatacatacataaagagatta 616

                                                                        
Query: 579  tataaaatccaaaatccaaaatatacaacataaaaatattcctagttataaacaattaga 638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  tataaaatccaaaatccaaaatatacaacataaaaatattcctagttataaacaattaga 556

                                                                        
Query: 639  actaacagtatttctgaatcatttccagatcattcaactaccatttactaaatactaaag 698
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 555  actaacagtatttctgaatcatttccagatcattcaactaccatttactagatactaaag 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space:   749232
Effective search space used:   749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)