Query= MSMg01no263_a11.b1 MSMg01no263_a11.b1 CHROMAT_FILE:
MSMg01no263_a11.b1 PHD_FILE: MSMg01no263_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:50 2005
(317 letters)
>mm_chr1_71341552_71342268
Length = 717
Score = 598 bits (309), Expect = e-175
Identities = 312/313 (99%)
Strand = Plus / Plus
Query: 5 gaattctctttgattgctaagactttttgtatcagcctcctcttggattttatgcactca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttgattgctaagactttttgtatcagcctcctcttggattttatgcactca 264
Query: 65 gagtggcatcccaacaccgacaatgattttgttagagaagaccctcttactcataaaaac 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtggcatcccaacacagacaatgattttgttagagaagaccctcttactcataaaaac 324
Query: 125 atacatttctaggatcagtgaggtcgctcatcagacagaggcacttgcttgacctggatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacatttctaggatcagtgaggtcgctcatcagacagaggcacttgcttgacctggatt 384
Query: 185 ccataccagatcttagaagatgataaggataaccaactcttgaaagttatcttctgacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccataccagatcttagaagatgataaggataaccaactcttgaaagttatcttctgacct 444
Query: 245 tcacaatgtgtgcctgcttggtgtctttctgtttctctgtctctctccctgtctctcttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacaatgtgtgcctgcttggtgtctttctgtttctctgtctctctccctgtctctcttt 504
Query: 305 ttcccaggaaata 317
|||||||||||||
Sbjct: 505 ttcccaggaaata 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_a11.g1 MSMg01no263_a11.g1 CHROMAT_FILE:
MSMg01no263_a11.g1 PHD_FILE: MSMg01no263_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:50 2005
(658 letters)
>mm_chr1_71484993_71486050
Length = 1058
Score = 1120 bits (579), Expect = 0.0
Identities = 641/667 (96%), Gaps = 17/667 (2%)
Strand = Plus / Minus
Query: 1 ctggaaaagtttttgtttctcctctcagcatctgcataacttctggcttagcattagaat 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 997 ctggaaaagtttttgtttctcctatcagcatctgcataacttctggcttagcattagaat 938
Query: 61 tcaagatttttcactgctcttaaaaatttgcataaagaaaagacctttggatgatttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 tcaagatttttcactgctcttaaaaatttgcataaagaaaagacctttggatgatttgat 878
Query: 121 ggttcatagtatttggtaatgagcagagaaaaaatattttatatcatgaaaagattactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggttcatagtatttggtaatgagcagagaaaaaatattttatatcatgaaaagattactt 818
Query: 181 taatagttactgaaattcatctttagatttctggcaaaacatatacccacatgtcttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 taatagttactgaaattcatctttagatttctggcaaaacatatacccacatgtcttgtt 758
Query: 241 taatgtatggctatctagatacatttaggaaaagcaccttcctctctagggaatgaaccc 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 757 taatgtatggctatctagatacatttaggaaaagcaccctcctctctagggaatgaaccc 698
Query: 301 aggactttttgttaaaaa--gtactctgtaactgagccaaatccccaacttttaaacatc 358
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aggacttttttttaaaaaaagtactctgtaactgagccaaatccccaacttttaaacatc 638
Query: 359 ccccaattgagtagctctcatcaaagaaacattttttcaaatctttgaatgattttattt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccccaattgagtagctctcatcaaagaaacattttttcaaatctttgaatgattttattt 578
Query: 419 ttataatagaataaaaggataagtaaataaaaa--taatag--tgt-ta-acctat-tgg 471
|||||| ||||||||||||||||||||||| || | | ||| || | ||| |
Sbjct: 577 ttataacagaataaaaggataagtaaataa---cctattgggatgtatata--tatat-- 525
Query: 472 gatatatatatatatatatatctttgaaactcagaatacttagtctaaatcccatatctg 531
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 524 -atatatatatatatatatatatatgaaactcagaatacttagtctaaatcccatatctg 466
Query: 532 cctcagccattggttgggtttcatgatacatagtatctgacaagcataacataatatgtc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cctcagccattggttgggtttcatgatacatagtatctgacaagcataacataatatgtc 406
Query: 592 aagaggaatatgcatattttcattgaaaaaataagctttacagagctttctacttttccc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagaggaatatgcatattttcattgaaaaaataagctttacagagctttctacttttccc 346
Query: 652 aatacta 658
| |||||
Sbjct: 345 actacta 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
