BAC Information

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BAC

Clone NameMSMg01-263H08
Chromosome1 (Build37)
Map Location 130,481,571 - 130,481,985
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659
Downstream geneCxcr4, LOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263H08.T7 (MSMg01no263_h08.b1)MSMg01-263H08.TJ (MSMg01no263_h08.g1)
ACCAG405276AG405277
length789767
length of high quality
(start - end)		419 (42 - 460)407 (76 - 482)
definitionCHROMAT_FILE: MSMg01no263_h08.b1 PHD_FILE: MSMg01no263_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:23 2005CHROMAT_FILE: MSMg01no263_h08.g1 PHD_FILE: MSMg01no263_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAAATGATCCGCTCCTGGAGCCATATTGCCCTCCAGGTCACATACTG
ATAGCTTCTGGACATCTTCTGAGTGATCCTATTGAAGAGAGCAGGAAACT
GGAGCTAGAGGCCAGACACATTACTTCATATCCTATAATGTTCACAAAAC
TATCTGCCTCAAAGAACTACCTGACCCAGAATATCAATTGTATTCCAACT
TCAGAAAAGCCTTTTTAAGGGCAGTAACTCTATCAGTAAATCACTCACAG
GGGAGGGGGTGGAGACAGACTGAACCACAGCACTTGATGGGCAGATGTCT
TGGTTAGGGTTTTACTGCTGTGAACACACACCATGACCAAGGCAGCATTT
ATAAGGACAACACCTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGCC
TATTATCATCAAGGTGAGAACATGTCAGCGTCCAGGCAGTCATGGTACAG
GAGGAGTTGAGAGTTCCTACATCTTCTTACTGACTTCTATACCGGCATGA
TGATAGCCTCTACCGTCATCCCCATATTTGTCTCACCTACTCCTATTAGG
CCACCACCCTCCACAAAGTGTTACTCCCTGTCTTCAGTCCTATACTCCCC
AATCTCAGCAGCTATTCTTCTTCTTTGGTCGTTTCTCTGTATTCATTTAC
TCTCCCTCTTTCCTCTTATACATTTCCTCTTTACCTCTCGTCCCTTTGTT
TTTACGGCTTCCTCTCACTATTACAATGCCCTCTCCTTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGTACCCTTGTATTTGGAGCATA
AATGTTCAGAATTGTGAGTTCTTCTTGGTAGATCTTAACTTTGATGAATA
TGAACTATCCTTCCTTATCTTTTTTGGTGACTTTTGGTTGAAAGTCAATT
TTATCAGATATTAGAATGGCTACTTCTGCTTGCTTCTTGGGACCATTTGC
TTGGAAAATTGTTTTCCAATCCTTTACTCTGAGGTAGTTTTTATCTCTGA
CACTGAGGTGCATTTCCTGTATGCAGAAAAATATTAGGTCCTGTTTATGT
ATCCAGTCTGTTAGACTATGTCTTTTTATTGCGGAATTGAATCCATTGAT
GTTAAGAGATATTAAGGAACAGTGATTGTTGCTCCCCATTATTATTAATA
TTATTTTTATGTTTGTGAGGCTATCTTCTATCGAGCCTGGTGTTAGATAA
ATACATTCTTGCTCTCTCTAAGGTGCAGTATCCCTCCTTGTACTCCCTTC
CTCCATCAATTACTCTCTTGTTCACCTAACTTTGATCCCTCTCTTTTGTG
ATGTCTGCTTTTTCCAATTTTTATCACTCTTCCGCTGTCTATTAGTGTTA
ATAATTTTTATATTTTTTCTTTTTCCTTCTTTTCTTCTATTATTTGTTTT
AATGTACCGCTATTTCTTCTTTCTTTTCTAATCAAATTGTAAATTCTCTT
TTATATTTAACTTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_h08.b1 MSMg01no263_h08.b1 CHROMAT_FILE:
MSMg01no263_h08.b1 PHD_FILE: MSMg01no263_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:23 2005
         (419 letters)



>mm_chr1_130481286_130482104
          Length = 819

 Score =  745 bits (385), Expect = 0.0
 Identities = 408/417 (97%), Gaps = 4/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaaatg--atccgctcctggagccatattgccctccaggtcacatactgata 62
           ||||||||||||||  ||  | ||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaattctttaaatgaaat--ggtcctggagccatattgccctccaggtcacatactgata 643

                                                                       
Query: 63  gcttctggacatcttctgagtgatcctattgaagagagcaggaaactggagctagaggcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gcttctggacatcttctgagtgatcctattgaagagagcaggaaactggagctagaggcc 583

                                                                       
Query: 123 agacacattacttcatatcctataatgttcacaaaactatctgcctcaaagaactacctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agacacattacttcatatcctataatgttcacaaaactatctgcctcaaagaactacctg 523

                                                                       
Query: 183 acccagaatatcaattgtattccaacttcagaaaagcctttttaagggcagtaactctat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acccagaatatcaattgtattccaacttcagaaaagcctttttaagggcagtaactctat 463

                                                                       
Query: 243 cagtaaatcactcacaggggagggggtggagacagactgaaccacagcacttgatgggca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cagtaaatcactcacaggggagggggtggagacagactgaaccacagcacttgatgggca 403

                                                                       
Query: 303 gatgtcttggttagggttttactgctgtgaacacacaccatgaccaaggcagcatttata 362
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 402 gatgtcttggttagggttttactgctgtgaacagacaccatgaccaaggcagcatttata 343

                                                                    
Query: 363 aggacaacacctaattggggctggcttacaggttcagaggttcagcctattatcatc 419
           |||||||||  |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 342 aggacaacatttaattggggctggcttacaggttcagaggttcagtctattatcatc 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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