Query= MSMg01no263_j23.b1 MSMg01no263_j23.b1 CHROMAT_FILE:
MSMg01no263_j23.b1 PHD_FILE: MSMg01no263_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:35 2005
(321 letters)
>mm_chr1_71960665_71961385
Length = 721
Score = 574 bits (297), Expect = e-168
Identities = 312/317 (98%)
Strand = Plus / Minus
Query: 5 gaattccttcaataactatagtatgattttatgatattctagtctaatagtaagtagttc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattccttcaataaccatagtatgattttatgatattctagtctaatagtaagtagttc 361
Query: 65 ttcctcagtatataaacactatgaaatagtggacttcaaggactttgctgtgttcaatgc 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcctcaatatataaacactatgaaatagtggacttcaaggactttgctgtgttcaatgc 301
Query: 125 taaattccttaagaccttaaacatggtatatgttttaaaatatatactattctgaatgaa 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 300 taaattccttaagaccttaaacatggtatatgttttaaaatatatactcttctgaatgaa 241
Query: 185 tgcataaatacatgaataattatgggaagggtattggttctagtttagtttctgttgcgg 244
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 240 tgcataaatacgtgaataattatgggaaaggtattggttctagtttagtttctgttgcgg 181
Query: 245 taacaaacctcatgaccaaaacaacttggaaggaaagggtttatttcattttatacttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 taacaaacctcatgaccaaaacaacttggaaggaaagggtttatttcattttatacttca 121
Query: 305 ccattgaggggagtcgg 321
|||||||||||||||||
Sbjct: 120 ccattgaggggagtcgg 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_j23.g1 MSMg01no263_j23.g1 CHROMAT_FILE:
MSMg01no263_j23.g1 PHD_FILE: MSMg01no263_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:35 2005
(649 letters)
>mm_chr1_71785877_71786927
Length = 1051
Score = 1087 bits (562), Expect = 0.0
Identities = 626/648 (96%), Gaps = 2/648 (0%)
Strand = Plus / Plus
Query: 1 ttcccctgctggatggagctccagaccaagttgagctagctccacagcccgtcctactgt 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 ttcccctgctggatggagctccagaccaagttgagctagctccacagtctgtcctactgt 260
Query: 61 cttgaggcaagagaacaggacatttgtatctctgtgccactcaggtgttagttctggaat 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cttgaggcaagagaacaggacatttgtatccctgtgccactcaggtgttagttctggaat 320
Query: 121 gtgcaagatgtcactcctagtacgtatttggaggctacccc--tcccccatccgttatct 178
|||||||| |||||||||||| |||||| |||||||||||| ||||| |||||||||||
Sbjct: 321 gtgcaagaagtcactcctagtgcgtattaggaggctacccccctcccctatccgttatct 380
Query: 179 atgggcaaagttcagtgaagccttcaggtgggagttgttgctaatgacgttatagcatcc 238
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 atgggcaaagttcagtgaagacttcaggtgggagttgttgctaataacgttatagcatcc 440
Query: 239 cagctcggtgagcatcagtgcacacgtcaggcctattctctctccagcctaccttaactt 298
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 441 cagctcggtgagcatcagtgcacacgtcaggcctattctctctccggcctaccacaactt 500
Query: 299 ctcaattcttctggatttctggaaaaccttacgtgaaggaggttcccgaaaaggattaca 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ctcaattcttctggatttctggaaaaccttacgtgaaggaggtttttgaaaaggattaca 560
Query: 359 gcccacgtttttatgtttggttctaggaccataaaatatcctaattatgtctccccttta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcccacgtttttatgtttggttctaggaccataaaatatcctaattatgtctccccttta 620
Query: 419 ccctcattcttgactcccaatctgtcagctgaagcggcctgaatgagaaaaagaaagctt 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 ccctcattcttgactcccaatctgtcagttgaagcggcctgaatgagaaaaagaaagctt 680
Query: 479 taacagagtggtaaaaatagggccagcaattaagatggaagattgtttcaaagctacata 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 taacagagtggtaaaaatagggccagtaattaagatggaagattgtttcaaagctacata 740
Query: 539 aacatgagctgaggaagccctcctgcaagagaaacgtggcagagctcacttgctgagggt 598
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacgtgagctgaggaagccctcctgcaagagaaacgtggcagagctcacttgctgagggt 800
Query: 599 tctgagcctgagttattattaaatttgataccatggtcctggtagttg 646
||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 801 tctgagcctgagttactatcaaatttgataccatggtcctggtagttg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1051
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1041
Effective search space: 665199
Effective search space used: 665199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
