BAC Information

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BAC

Clone NameMSMg01-263K13
Chromosome1 (Build37)
Map Location 67,213,999 - 67,361,550
singlet/doubletdoublet
Overlap geneCps1
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263K13.T7 (MSMg01no263_k13.b1)MSMg01-263K13.TJ (MSMg01no263_k13.g1)
ACCAG405419AG405420
length724772
length of high quality
(start - end)		322 (46 - 367)376 (77 - 452)
definitionCHROMAT_FILE: MSMg01no263_k13.b1 PHD_FILE: MSMg01no263_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:38 2005CHROMAT_FILE: MSMg01no263_k13.g1 PHD_FILE: MSMg01no263_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,213,999 - 67,214,316)(67,361,177 - 67,361,550)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCGTGGGAGCTCTCCCGAATGCTTTGGGAAGCTCTTGCCGTACATT
CATACTTTCATTGCCAGATATAATTCCGTCCTTGCTTCCCCATGATAAGA
AACCGGCATATGGGGAAGGTGTAATTACATTCCCATTGGTGGTGTAATAA
TATTCCATGACAGAAAAATATAGCCACCATATGTCATATTTGGTAAGTTA
AAAAAATCTCCAGGCTGGAGAGACTGTTTTGAGAATAGATTTGAAAAATG
AAATATCTTCTTTTATGTAGCATTCCTAATGGCACATTGTTTTATCGCCA
TGTTAGCTTCAAGAATATATAACACCTTTCTTTTCCCCTTAAATGACAGA
CTTTCAGACTAAAGCTAAAAATACCCCCGCTCTGTATCTCTTTCATTCTC
AAATAAGTGATGATTATTTCTGCCTTTGGCCATGGTGTAGTGTCAACTTA
AAATTCACTTGATGAAAGTGAAAAAATTACAGCCATGTTTTACTTAACTT
TGTAGAGTGATACTTTTTTTTTAGACTGAGATAACTTACATCAACTCCCC
TCTGTGCAAATCAGCCTATTAACCTGAGTTTCTGGGATTTCATGTTGTGA
CTGTATGAGTGTGTGTGTGTGTACCTCTTTAATATTTTTTATTATCACTT
CTTTTTTATATTTACTTACTTTTT

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGACAAACACCAGGGAATTAT
GAGTTGCAGACAGAGCAGACAAGGCTACGTTCTTAGTCTAGTTACATTAT
TCTGAGCTACAGAGCAAGACTCTGCCTCAAAAACAAAAATCCAGCAAAAT
CCAGGCATAGAGTAGATATGGTGAAAAGATGGATAGATGATCCCATCACG
TGTTAGGAACTATTGGAGTTGATAGCTACCGGAAGGAGGAGAGTCAGCTT
TCTGTAATAACGTAACTCCCCATAGACTGAGGATACAAAAGGGTAGGCCC
TAATCCCAAGACTACCTGGACAATGTAAATTTAACATGATTTTTAAAAAA
GGAAAAAAAAGTGGGAGAAATAGGAGAATGGAGAGGGTAGTAAGGAGTTG
CGCCTTTCTTTTTTCTTTTTTTCTTTCCCCCTTGTCTCTTTCCCCTTCTC
TTTTCCTTTCTCTTTTTCTTCTCTCCCCCTTTCTCTCCTTATTCCCCTCT
TCCTTTCTTTCTCCCTTTTTCTTTTCCTTTCTCTTTCTCCCTCCTCCTCT
TCGTTTTCTTTCCTTTTCTTCCTTCCTCCCCTCGCGTGTCCGTTTTGTTC
GCTTCTTTTTCCTTTTCCTCTCTCTCCTCTCCCCCTTTCCTCCCTTGCCG
CTCTGTCTCCCTTCTATTCTTTCTGTTCTCTTATTTTTCTCTTCTGCTTC
CCTCTTTTTATAGATTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_k13.b1 MSMg01no263_k13.b1 CHROMAT_FILE:
MSMg01no263_k13.b1 PHD_FILE: MSMg01no263_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:38 2005
         (322 letters)



>mm_chr1_67213795_67214516
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccgtgggagctctcccgaatgctttgggaagctcttgccgtacattcatactttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccgtgggagctctcccgaatgctttgggaagctcttgccgtacattcatactttc 264

                                                                       
Query: 65  attgccagatataattccgtccttgcttccccatgataagaaaccggcatatggggaagg 124
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgccagatataattatgtccttgcttccccatgataagaaaccggcatatggggaagg 324

                                                                       
Query: 125 tgtaattacattcccattggtggtgtaataatattccatgacagaaaaatatagccacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaattacattcccattggtggtgtaataatattccatgacagaaaaatatagccacca 384

                                                                       
Query: 185 tatgtcatatttggtaagttaaaaaaatctccaggctggagagactgttttgagaataga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgtcatatttggtaagttaaaaaaatctccaggctggagagactgttttgagaataga 444

                                                                       
Query: 245 tttgaaaaatgaaatatcttcttttatgtagcattcctaatggcacattgttttatcgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgaaaaatgaaatatcttcttttatgtagcattcctaatggcacattgttttatcgcc 504

                             
Query: 305 atgttagcttcaagaata 322
           ||||||||||||||||||
Sbjct: 505 atgttagcttcaagaata 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_k13.g1 MSMg01no263_k13.g1 CHROMAT_FILE:
MSMg01no263_k13.g1 PHD_FILE: MSMg01no263_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:38 2005
         (376 letters)



>mm_chr1_67360865_67361640
          Length = 776

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagacaaacaccagggaattatgagttgcagacagagcagacaaggctacgttcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agcagacaaacaccagggaattatgagttgcagacagagcagacaaggctacgttcttag 627

                                                                       
Query: 61  tctagttacattattctgagctacagagcaagactctgcctcaaaaacaaaaatccagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctagttacattattctgagctacagagcaagactctgcctcaaaaacaaaaatccagca 567

                                                                       
Query: 121 aaatccaggcatagagtagatatggtgaaaagatggatagatgatcccatcacgtgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaatccaggcatagagtagatatggtgaaaagatggatagatgatcccatcacgtgttag 507

                                                                       
Query: 181 gaactattggagttgatagctaccggaaggaggagagtcagctttctgtaataacgtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaactattggagttgatagctaccggaaggaggagagtcagctttctgtaataacgtaac 447

                                                                       
Query: 241 tccccatagactgaggatacaaaagggtaggccctaatcccaagactacctggacaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccccatagactgaggatacaaaagggtaggccctaatcccaagactacctggacaatgt 387

                                                                       
Query: 301 aaatttaacatgatttttaaaaaaggaaaaaaaagtgggagaaataggagaatggagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaatttaacatgatttttaaaaaaggaaaaaaaagtgggagaaataggagaatggagagg 327

                         
Query: 361 gtagtaaggagttg 374
           ||||||||||||||
Sbjct: 326 gtagtaaggagttg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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