Query= MSMg01no263_l04.b1 MSMg01no263_l04.b1 CHROMAT_FILE:
MSMg01no263_l04.b1 PHD_FILE: MSMg01no263_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:41 2005
(329 letters)
>mm_chr1_53580697_53581425
Length = 729
Score = 592 bits (306), Expect = e-173
Identities = 318/322 (98%)
Strand = Plus / Minus
Query: 6 gaattccactgaattctccttgaaatgaaatgttgttaattcagtttagctgacagaatg 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattccactgaattctgcttgaaatgaaatgttgttaattcagtttagctgacagaatg 468
Query: 66 atgactgggcatgaaccaaaatcatgaaaggcagtaatgagcacctaaaagacttgtgtc 125
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 467 atgactgggcatgaaagaaaatcatgaaaggcagtaatgatcacctaaaagacttgtgtc 408
Query: 126 tatttagagacaaaagcaagctaaattcttgtccttcctctaaggctggagataattttc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tatttagagacaaaagcaagctaaattcttgtccttcctctaaggctggagataattttc 348
Query: 186 ctaacctctcagtccttgctggttcctgttgagtaatgtgtactattgtgaagatcagag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctaacctctcagtccttgctggttcctgttgagtaatgtgtactattgtgaagatcagag 288
Query: 246 aagatacatgcaaagtacctgggcaggtagagacaggctgttgctgtggtaactgttgtt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aagatacatgcaaagtacctgggcaggtagagacaggctgttgctgtggtaactgttgtt 228
Query: 306 catattcattccttctttgcat 327
||||||||||||||||||||||
Sbjct: 227 catattcattccttctttgcat 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_l04.g1 MSMg01no263_l04.g1 CHROMAT_FILE:
MSMg01no263_l04.g1 PHD_FILE: MSMg01no263_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:41 2005
(593 letters)
>mm_chr1_53456634_53457625
Length = 992
Score = 1058 bits (547), Expect = 0.0
Identities = 584/601 (97%), Gaps = 9/601 (1%)
Strand = Plus / Plus
Query: 1 cctcagcatggagttcaagttcagcttgagctgtatgaaaccctatatcacacaaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cctcagcatggagttcaagttcagcttgagctgtatgaaaccctatatcacacaaagaaa 252
Query: 61 atcttagtaacaaatgaaattcaagaatacacacacacacacacacacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atcttagtaacaaatgaaattcaagaatacacacacacacacacacacacacacacacac 312
Query: 121 acacacaca--------attaggaagacaatacagatatgaatgaggaacttatcaaaca 172
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acacacacacacacacaattaggaagacaatacagatatgaatgaggaacttatcaaaca 372
Query: 173 cagaaagaaagattgctgtgagttcaaggccagcctgggctacaaagtaagagtctctct 232
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 cagaaagaaagattgctgtgagttcaaggccagcctgggctacacagtaagagtctctct 432
Query: 233 tgaaagtcaaagaaaatgtaggtgcaagtctccaaatcagactagcttaagcagttatac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaaagtcaaagaaaatgtaggtgcaagtctccaaatcagactagcttaagcagttatac 492
Query: 293 taagaatattgatttttgggctggtgagatggctcatctgttaagagcactgactgtttt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taagaatattgatttttgggctggtgagatggctcatctgttaagagcactgactgtttt 552
Query: 353 tctggaggtcatgagttcaaattccagcaaccacatggtggctcacatccatctgtaatg 412
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctggaggtcatgagttcaaatcccagcaaccacatggtggctcacatccatctgtaatg 612
Query: 413 agaaacaaataaaaaaaacctatgtgccagagcgagcagggtcccagagtgagtaggaga 472
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 613 agaaacaaataaaaaaatcctatgtgccagagtgagcagggtcccagagtgagtgggaga 672
Query: 473 aagggaagagggaaaaacagaagaaaaaaaaagagagagatcatggcagaatgaaatgcc 532
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |
Sbjct: 673 aagggaagagggaaaaacagaagaaaaaaaa-gagagaaatcatggcagaatgaaaagac 731
Query: 533 tacagctctttgtagcactagtaaaagatcaaatgtctgcataattgacatacttgaagg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tacagctctttgtagcactagtaaaagatcaaatgtctgcataattgacatacttgaagg 791
Query: 593 a 593
|
Sbjct: 792 a 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
