BAC Information

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BAC

Clone NameMSMg01-263L10
Chromosome1 (Build37)
Map Location 146,048,566 - 146,048,897
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13
Downstream geneRbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L10.T7 (MSMg01no263_l10.b1)MSMg01-263L10.TJ (MSMg01no263_l10.g1)
ACCAG405461AG405462
length739768
length of high quality
(start - end)
336 (379 - 714)547 (77 - 623)
definitionCHROMAT_FILE: MSMg01no263_l10.b1 PHD_FILE: MSMg01no263_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:42 2005CHROMAT_FILE: MSMg01no263_l10.g1 PHD_FILE: MSMg01no263_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAGTCTATTCAATATTTTAGTCACAAAGGCTTGGGACAGTGTT
CTGGAATAAAGATGGTAGCCATCCGAAAACCTTATCTAGGTCTCTTTCTT
TGTGGTCTGTATGTTATAGAAATGAAACAAATCTCAAAATTAATTATATG
TGTTGGATTATCTCAGAAAACCGTACTATGATAAAGCTGTTTATTGTGGA
AATAAAACTTGCCCATCTTATTTTCTTCTGTATTGTGACGATAGTTACTT
TCTATTAACTTGATAAACTAAAAACATAACTTTTTACATCTTCAATAAAA
ATAATACCTAAAATTGTTTGTACAAATTTGATCATTTTGAAACTGTTATT
TATAATGTACCCAAAAACTATAACATCATGTGTTAAAATAAGCATTATAT
CCAGTTGAAGGAGAAGTAAAAATCACCCCAGACCTGCTACCATCACACAG
TATTCGCCTGACTCTTTACAATCTATCTTTAGTCTATTTATTGTCCATTT
TCTAAAATATATCAAAAGCAGAATAGAAAGTCTGTTGAAAACATGATTGC
AAGTGGAAGACCAAAAACTTTGGAGACCAAGATTTTTCTGCATTTTTTTT
GTCATTAAGTAAATGCATTTGATTCTGTCTGTCTTCTACCCCTCCCTTAA
TCTATACCTAGTTGGGTTAAATTTATGGTCTAAAATTTN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCT
GAGAAGCACCTGAAAAACTGTTCAGCATCCTTAATCATCAGAGAAATGCA
AATCAAAACAACCCTGAGATTCCAAATTCAGGTGACAGCAGATGCTGGTG
AGGATGTGGAGAAAGAAGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGAC
ATAGTCCTATCAGAGTATCCCACAATACCTCTCTGGGCATATATCCAGAA
GATGTCCCAACCAGTAAGAATGACACATGCTCCATTATGTTCATAGCAGC
CTTTTTTATAATAGCCAGAAGTTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGACTATATGGTACATTTACACAATGGAGTACTACTGA
GCTATTAAAAAGAATGAATTTATGAAATTCTTAGGCAAATGGTTGGACGT
GGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATG
ATATGTACTCACTGATAAGTGGATAATAGCCCAGAAACTTAGAATACCCA
AGATATAAGATACAATTTGCAAAACACATGAAACTGAAGAAGAATGAAGA
CCAAAGTGTGGACACTTTGTCCCTTCTTAGAATTGGGAACAATCACCCAT
GTAAGGAGTACAGAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l10.b1 MSMg01no263_l10.b1 CHROMAT_FILE:
MSMg01no263_l10.b1 PHD_FILE: MSMg01no263_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:42 2005
         (336 letters)



>mm_chr1_146048366_146049097
          Length = 732

 Score =  578 bits (299), Expect = e-169
 Identities = 326/337 (96%), Gaps = 6/337 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatcattttgaaactgttatttataatgtacccaaaaactataacatcatgtgttaaaa 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tgatcattttgaaactgttatttataatgtacacaaaaactataacatcatgtgttaaaa 260

                                                                       
Query: 61  taagcattatatccagttgaaggagaagtaaaaa-tcaccccagacctgctaccatcaca 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 taagcattatatccagttgaaggagaagtaaaaaatcaccccagacctgctaccatcaca 320

                                                                       
Query: 120 cagtattcgcctgactctttacaatctatctttagtctatttattgtccattttctaaaa 179
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cagtattcgcctgactctttacaatctatctttagtttatttattgtccattttctaaaa 380

                                                                       
Query: 180 tatatcaaaagcagaatagaaagtctgttgaaaacatgattgcaagtggaagaccaaaaa 239
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tatatcaaaagcagaatagaatgtctgttgaaaacatgattgcaagtagaagaccaaaaa 440

                                                                       
Query: 240 ctttggagaccaagatttttctgcattttttttgtcattaagtaaatgcatttgattctg 299
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 441 ctttggagaccaagatttttctgcactttttt-gtcattaagtaaatgcatttgattctg 499

                                                
Query: 300 tctgtcttctacccctcccttaatctatacctagttg 336
           |||    ||||||||||||||||||||||||||||||
Sbjct: 500 tct----tctacccctcccttaatctatacctagttg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 732
Length adjustment: 9
Effective length of query: 327
Effective length of database: 723
Effective search space:   236421
Effective search space used:   236421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)