Query= MSMg01no263_l14.b1 MSMg01no263_l14.b1 CHROMAT_FILE:
MSMg01no263_l14.b1 PHD_FILE: MSMg01no263_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:43 2005
(561 letters)
>mm_chr1_156289513_156290473
Length = 961
Score = 1000 bits (517), Expect = 0.0
Identities = 538/545 (98%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 17 gaattccatatctgacctatgtggggccagagtgatttgtgatatcagacttgtttcccg 76
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattccatatctgaactatgtggggccagagtgatttgtgatatcagacttgtttcccg 276
Query: 77 agttgttaatatttacacaaatgtaatgagatagtttgaaggcaggatgctcagcttaga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agttgttaatatttacacaaatgtaatgagatagtttgaaggcaggatgctcagcttaga 336
Query: 137 acaaaattcattaatatttcatatgtgtctcacccacatagcctaagggtaatttatata 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acaaaattcattaatatttcatatgtgtctcacccacatagcctaagggtaatttatata 396
Query: 197 atattttattaatcttgtacatgaaacaaagtttcatggtatggaattttctacttgcca 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atattttattaatcttgtacatgaaacaaagtttcatggtatggaattttctacttgcca 456
Query: 257 tatcgtatcattcaaaaatgttttggacttgtaagcatttggatttttatattagaggtg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatcgtatcattcaaaaatgttttggacttgtaagcatttggatttttatattagaggtg 516
Query: 317 ttcaacctgtatctgccagtgtatttctcttataatctatgaccatttctaattcagctc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttcaacctgtatctgccagtgtatttctcttataatctatgaccatttctaattcagctc 576
Query: 377 cttcgccaccaaacaaacctagccatgaaactaataatgttccaaacctatgcatgtgct 436
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctttgttaaaaaacaaacctagccatgaaactaataatgttccaaacctatgcatgtgct 636
Query: 437 ggaggagcacacaataaaacatattccctgttattagaaacacagatgccatgagagcaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaggagcacacaataaaacatattccctgttattagaaacacagatgccatgagagcaa 696
Query: 497 gggacataagcaaatgtcttaatgctgcaactgtagcacctactttttttttccttctag 556
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 697 gggacataagcaaatgtcttaatgctgcaactgtagcacctactttttttt-ccttctag 755
Query: 557 gccat 561
|||||
Sbjct: 756 gccat 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_l14.g1 MSMg01no263_l14.g1 CHROMAT_FILE:
MSMg01no263_l14.g1 PHD_FILE: MSMg01no263_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:43 2005
(292 letters)
>mm_chr1_156450068_156450759
Length = 692
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Minus
Query: 1 tggaaggagactcctgagctccctggggcagcggtctatcaaagagcaaacctgaaagag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 tggaaggagactcctgagctccctggggcagcggtctatcaaagagcaaaactgaaagag 432
Query: 61 aagagcagggtggacatttgggtagagcacattggctttggcatggttaagagacctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagagcagggtggacatttgggtagagcacattggctttggcatggttaagagacctcaa 372
Query: 121 aagcaagctagggagttggagaagcctcttcatatccaggacagttgtatgcgaagacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aagcaagctagggagttggagaagcctcttcatatccaggacagttgtatgcgaagacag 312
Query: 181 ttgtatgttaagaagatggccaataagccagcataagtcctaataatgtattcatggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttgtatgttaagaagatggccaataagccagcataagtcctaataatgtattcatggtat 252
Query: 241 caataagtgctgtgattgaatctgtcttccttgactaatctcaatgtaaag 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 caataagtgctgtgattgaatctgtcttccttgactaatctcaatgtaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
