BAC Information

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BAC

Clone NameMSMg01-264C20
Chromosome1 (Build37)
Map Location 196,033,253 - 196,033,560
singlet/doubletsinglet
Overlap genenone
Upstream geneHsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C20.T7 (MSMg01no264_c20.b1)MSMg01-264C20.TJ (MSMg01no264_c20.g1)
ACCAG405797AG405798
length726737
length of high quality
(start - end)
315 (46 - 360)77 (128 - 204)
definitionCHROMAT_FILE: MSMg01no264_c20.b1 PHD_FILE: MSMg01no264_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:17 2005CHROMAT_FILE: MSMg01no264_c20.g1 PHD_FILE: MSMg01no264_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTTTAATTTTTATCTTTGTTTTAATTATCATCTTGAAATATAT
AAGTGATATATTCAACATTTAATGGTTAAAATATATTCAAAGTCTTCCCA
CTCTGGTCTCAGCTATGTTCTTTAGCTGTGATGGACGTGTGGCCACTTCA
GGAGAGTCTAGCACGTGTGATGATAAGACCATGCATACATAAGATGCATA
TGAGTTGTATGAGCATGGATATATCAGCTACTATTGCACACATGAAAAAT
GCATGCAAAAGACCACTCTTCTTTTTATTCTTACTTTGTACTTTATGAAC
TTCTTATTAACTTTGTTCTCCTGNGCAGNNACCTGATACTGTGTGGATGC
CTCAAAACCCGTGTAGGTAATTTCTAGAATGAAAACACAGGCTACCATTC
TCCATCACAAACATTCTTCACTGAACTTCCCTGTGTATACATCTTTGTTC
TCATGTGCAAGTCTGTCTTCAGAGTAATGAGTTTTCAGCAGTGACTAGCA
GGTATAGAAAATACATTACACACCAGCAGTGTCCACTCACAGATGGCTCC
AGTTTCTACTGTCCCTCTTCACTGTCCTCAGCAGGACAATAGTGTCATCA
CTTTATCTGTGACACTTTGATAGATAAAGATTCTGTCTTTATTATGTTTT
CTTCACACTTGTCTATACCTTGAGTA
CATGCAGTGNTAGCCTGGNGGCGCCGGTTTCTCACCAGGNGAACTATNAA
GGTTTCCAAATACTCCCTGAGGATACNATGGCTGAAAGCCCTGAAAAATG
TTCANCCCCTTAATCTCANGAAATGCNATCAAAACAACCCTGAAATCCAT
CTCACACCAGTCAAAATGGCTAAATCAAAAATTCAGGTGACAGCAATGCT
GGAAAGGAGTGGAGAAAGAGGAACACTCCTCCTTGTTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGGGTTCCCAAATTTTGTAAT
TTAACAACAGAACNNNNNGNNNTCCTCTCTTTTTTTTATCTCCCCCCCCC
GCCCAACCGGTAAGAAAAACCNTGCTCCACTATGTTCAAACTAANCATCA
TTTATAATATTCATAACCTGGAAAAACCTTAAAACAAAAAAAAAAAAAAA
AAAAAAAATTTTACATACATCAAATTTAACTAAAAAAATAAAAATTAATC
CTTTTTTTTACACAATGAATTTTATGAAATTTCCAAAGGAAAAGGAAAGA
GAAAGAATGATTCCCCCCCAGGGCCCTCTCATTTNNCAAANAAAANNNAN
AAAAAAAAAAAAAGGGGCTGACCAAAAAAAATAAAAGAGAAAAGATTCTT
GCTAAAATCTTTTACTCCTATGCTGGGCTAAATCACCATAAAAACAACAC
CGTTTAAATAAAATTAATGTTAAAAGTAAAGGAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c20.b1 MSMg01no264_c20.b1 CHROMAT_FILE:
MSMg01no264_c20.b1 PHD_FILE: MSMg01no264_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:17 2005
         (315 letters)



>mm_chr1_196033049_196033763
          Length = 715

 Score =  542 bits (280), Expect = e-158
 Identities = 301/308 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttttaatttttatctttgttttaattatcatcttgaaatatataagtgatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 512 gaattcccttttaatttttatctttgttttaattatcatcttgaaatatgtaagtgatat 453

                                                                       
Query: 65  attcaacatttaatggttaaaatatattcaaagtcttcccactctggtctcagctatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 452 attcaacatttaatggttaaaatatattcaaagtcttcccactctggtctcagctatatt 393

                                                                       
Query: 125 ctttagctgtgatggacgtgtggccacttcaggagagtctagcacgtgtgatgataagac 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 392 ctttagctgtgatggacgtgtggccacttcaggagagtctagcacatgtgatgataagac 333

                                                                       
Query: 185 catgcatacataagatgcatatgagttgtatgagcatggatatatcagctactattgcac 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 catgcatacataagaagcatatgagttgtatgagcatggatatatcagctactattgcac 273

                                                                       
Query: 245 acatgaaaaatgcatgcaaaagaccactcttctttttattcttactttgtactttatgaa 304
           ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 272 acatgaaaagtgcattcaaaagaccactctgctttttattcttactttgtactttatgaa 213

                   
Query: 305 cttcttat 312
           ||||||||
Sbjct: 212 cttcttat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)