BAC Information

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BAC

Clone NameMSMg01-264N23
Chromosome1 (Build37)
Map Location 32,529,630 - 32,529,915
singlet/doubletsinglet
Overlap geneKhdrbs2
Upstream geneLOC624275, LOC666056, LOC100041238
Downstream geneEG408191, EG633498, LOC213711, LOC100040828, EG666108, Prim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264N23.T7 (MSMg01no264_n23.b1)MSMg01-264N23.TJ (MSMg01no264_n23.g1)
ACCAG406300AG406301
length771756
length of high quality
(start - end)
271 (46 - 316)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no264_n23.b1 PHD_FILE: MSMg01no264_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:10 2005CHROMAT_FILE: MSMg01no264_n23.g1 PHD_FILE: MSMg01no264_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTTTGGCAATACTGAAGGGCTGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGCCAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGTGAGGATGTGGAGTGAGAGGGACACTCCTCCATTGTTGGTG
GGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCGGTTCCTTA
GAAAATTTGAAATAGTATTTTTTTTAAATCCAGCAATTCCTCTCCTGGGT
ATATAATCTTTTAGATAGTTTCCCCCGCCACCACCCCCCAGATGTTTGAG
TATGTTGATAGGAACCTTATTTTCCCCACACAAAAAAAAAAAGAGAAGCG
GGAGTGGGCCGCAACTTTAGGACTGGATAACGGATATTGTGGTCAGTTTT
ACATAATGGATTAACTACCTCCCTAGGTATACCCATGACCTCCTTGAAAC
TCTTAAGCCCATTGTATGGCCCTTGGATGCCCTCTCCCTTTACTGCTTTT
ACTTCCTTCATATGAGATTTCTCTTATAAAAACGATTTCTTTTGTTTGTA
CTCTCCAGACATTTTATTTTTTCATACTTCCGATATCTGCTGTATCATAT
GCTGTGTATTTTCGTTTTCTCATCAATCCTTTCTATTTCTACTTTTCTCT
CTCTTGAAATTTTTTTATATC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGATCATATAAGGACTCATATCTTGC
TTATAATAATTTGTAATTATCCCCAATTTGAAGCTGATCGAACTTTTTAA
GGACAGGTATAATTCAGCAGAGTTTGATTCTTCACACACAAGATACTCTT
TATCACATGCATGCCACTGAGATCCATGAAAGCTTCTTTCAGAGCATCCA
CATGTGCATCCATGGCCTAACTTCTGCTGTAAATGCCATTAGTGTTCTGC
AAATCACAGAATGGAGTTTATTTCTTGAATTGGTAAATTTAGCCCTTCCT
CACTGCTATTTTCNNTGCCGNANCCANANCCCTCTTCATAAGCATCATGA
GCTGGAGGTGGGGGTGCTCTGTATCAAGAAAACTGCTGCCGTCCCCCGGG
CTCGAGGTGTGGGGACACCTCTTGCTATTGGGGGCACTGGAAGAGCTCCA
CGGGTCACAGTGGTTCCCCGAGGGGTAAGCACACCTCGTCCAGGTGTTGG
TGGTGGTGGAACAGCACCGCCACGGCCCCTAGAAGAAATAGGTGACATGC
AGATGAAGTGACATGCAGACAAGAAATGAATTTCTCAGCTCACTGCCTTC
ACACAAATCAGTCTCTTCTTCTGCTAGTTATTTAATATTTCATAAATTGG
GTTGAGTCATATTAAAATAATTTCCTTTAAATTTTATGACTTAATGGGAA
TGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_n23.g1 MSMg01no264_n23.g1 CHROMAT_FILE:
MSMg01no264_n23.g1 PHD_FILE: MSMg01no264_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:11 2005
         (286 letters)



>mm_chr1_32529430_32530115
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatcatataaggactcatatcttgcttataataatttgtaattatccccaatttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 486 tctgatcatataaggactcatatcttgcttataataatttgtaattatttccaatttgaa 427

                                                                       
Query: 61  gctgatcgaactttttaaggacaggtataattcagcagagtttgattcttcacacacaag 120
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 426 gctgatcgaactttttaaggacaggtacatttcagcagagtttgattcttcacacacaag 367

                                                                       
Query: 121 atactctttatcacatgcatgccactgagatccatgaaagcttctttcagagcatccaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 atactctttatcacatgcatgccactgagatccatgaaagcttctttcggagcatccaca 307

                                                                       
Query: 181 tgtgcatccatggcctaacttctgctgtaaatgccattagtgttctgcaaatcacagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgtgcatccatggcctaacttctgctgtaaatgccattagtgttctgcaaatcacagaat 247

                                                         
Query: 241 ggagtttatttcttgaattggtaaatttagcccttcctcactgcta 286
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggagtttatctcttgaattggtaaatttagcccttcctcactgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)