BAC Information

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BAC

Clone NameMSMg01-265K23
Chromosome1 (Build37)
Map Location 135,092,425 - 135,092,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265K23.T7 (MSMg01no265_k23.b1)MSMg01-265K23.TJ (MSMg01no265_k23.g1)
ACCAG406881AG406882
length756766
length of high quality
(start - end)
319 (45 - 363)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no265_k23.b1 PHD_FILE: MSMg01no265_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:15 2005CHROMAT_FILE: MSMg01no265_k23.g1 PHD_FILE: MSMg01no265_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTGACTGCATATATCTGTGTCCTGAGGAGAGCCCCAGGCCTGT
GGAAGGCTGTGGAGGGAAGCACGGCAGGAGAAGGCCTCAGAGAAGATACC
TACTACTTCTAAAGGGAGACAAAGGGCAGAGGAGGGAGCCAGGCAGGTGG
CTAGCCAGCCTAAGTCCACCAACAGAACTTATACTGTTTGGTGACTAGTT
TCTCTTAAGCAGCAAGCTCAGAAACACAGAGAAGGCATTCATGTCAGAGA
AGTTAAAGCTGATTCTTTTGTCCAGTGGAGGATGAGCCACCAAGCAGCTG
ATTGGAGACTCCCTCTTGTTTGCCCCGCACCCACAGTGGTAAAGGCTTGC
TCAGCAGGTGTGAGGCCCCCCATTCGATCCCCAGTACTGCCAGGGAGAAA
GGAAACCTCTGCCTTGACCGTACTTTGGGGCTGCGAAGATGGTTTAGTGG
GTGAAAATCCTTGTTACACAATCATGAGGACCTAAGTTCAAATCTCCAGC
ATCCAAGTAAAAACTCACCTGCAGGCCTTCGGGTGGGTGTGGTTATTGTC
ATCTCACTCCTCTACTCTTCTTCTCTTTTTTGTCGCTCTTCCTTCTCATC
CCTATACCAAACGGGTTTAGCTTAGTATCTAATGCGTTATCGCCTCTCTA
ACCTCTTTTCACCTTTTCGACCTTTATATTGTTATATCATACTTCGTACG
CTTTTG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTTAAAAGCATATTTAGCTGG
GCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG
CGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTCCAGGACA
GCCAGGGCCAGGGCTATACAGAAAAACCCTGTCTCGAAAAAAAAAAAAAA
AAAAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAAGAAAGAAAGAAAGAAAGAATGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAATTTTTTTTTTGACCCACCCCCCCGACCAGAGA
AAGAAAGAGAAAGAAAGAGAAAGAACGCCCCCCCCTGAGAAAGAAAGAGA
AAGAATGAGAAAGAAAGAGAAAGAAAGAGAAAGAAAGAGAAAGAAAGAGA
AAGAAAGAGAAAGAAAGAGAAAGAAAGAGAAAGAAAAGAAAGAGAAAGAA
AGAGAAAGGAAAGAAAGAGAAAGAAAGAGAAAGGAAAGAAAGAGAAAGAA
AGAGAAAGGAAAGAGAATGGAAAGAGAAAGAAAGAGAAAGACAGAGAAAG
AAAGAGAAAGAAAGGAAAGAAAGGATAGAAAGGAAAGATAGGAAAGAAAG
GAAAGAAAGGAAAGAAAGGAAAGAAAGGAAAGAAAGGAAAGAAAGGATAG
AAAGGTAAGAAAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_k23.b1 MSMg01no265_k23.b1 CHROMAT_FILE:
MSMg01no265_k23.b1 PHD_FILE: MSMg01no265_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:15 2005
         (319 letters)



>mm_chr1_135092221_135092939
          Length = 719

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgactgcatatatctgtgtcctgaggagagccccaggcctgtggaaggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctctgtgactgcatatatctgtgtcctgaggagagccccaggcctgtggaaggct 460

                                                                       
Query: 65  gtggagggaagcacggcaggagaaggcctcagagaagatacctactacttctaaagggag 124
           ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 459 gtggagggaagcaaggcaggagaaggcctcagagaagatacctaccacttctaaagagag 400

                                                                       
Query: 125 acaaagggcagaggagggagccaggcaggtggctagccagcctaagtccaccaacagaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaaagggcagaggagggagccaggcaggtggctagccagcctaagtccaccaacagaac 340

                                                                       
Query: 185 ttatactgtttggtgactagtttctcttaagcagcaagctcagaaacacagagaaggcat 244
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 339 ttacactgtttggtgactagtttctcttaagcagcaagctcagaaacacagagaagacat 280

                                                                       
Query: 245 tcatgtcagagaagttaaagctgattcttttgtccagtggaggatgagccaccaagcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcatgtcagagaagttaaagctgattcttttgtccagtggaggatgagccaccaagcagc 220

                          
Query: 305 tgattggagactccc 319
           |||||||||||||||
Sbjct: 219 tgattggagactccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)