Query= MSMg01no265_n11.b1 MSMg01no265_n11.b1 CHROMAT_FILE:
MSMg01no265_n11.b1 PHD_FILE: MSMg01no265_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:28 2005
(319 letters)
>mm_chr1_133165780_133166499
Length = 720
Score = 565 bits (292), Expect = e-165
Identities = 307/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Plus
Query: 8 gaattctctgggaggcttc-cacagaacgagtgtcacgaatcattcagagtcctggtgaa 66
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctgggaggcttcacacagaacgagtgtcacgaatcattcagagtcctggtgaa 267
Query: 67 ttaaggtcctacctgcggtagggggcctgcttgttctgggacatgaaagggtatctaccc 126
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttaaggtcctacctggggtagggggcctgcttgttctgggacatgaaagggtatctaccc 327
Query: 127 ttttgagggtagtgagactgcccttaccccactgccctcgatcccagagaggcagggccc 186
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 328 ttttgagggtagtgagactgcccttacccgactgccctcgatcccagagaggcagggccc 387
Query: 187 cggtggatttctccgtgataggcaggactaggccagggatggatatacatttgggaatac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cggtggatttctccgtgataggcaggactaggccagggatggatatacatttgggaatac 447
Query: 247 aaggtttgaaggacctggtgagggtgctaatgttgttggaaggggaagagtgggagcagg 306
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 aaggtttgaaggacctggtgagggtgctaatgttgggggaaggggaagagtgggagcagg 507
Query: 307 agggctctggct 318
||||||||||||
Sbjct: 508 agggctctggct 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no265_n11.g1 MSMg01no265_n11.g1 CHROMAT_FILE:
MSMg01no265_n11.g1 PHD_FILE: MSMg01no265_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:28 2005
(286 letters)
>mm_chr1_133296513_133297198
Length = 686
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 1 ttcttcatagtttctgaccccttagttatccaggcagttactgttaaatcccagggacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttcatagtttctgaccccttagttatccaggcagttactgttaaatcccagggacaa 323
Query: 61 gaatagtgatgttttctggtattttgtttttgtttttaatttcatttttaatagacaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaatagtgatgttttctggtattttgtttttgtttttaatttcatttttaatagacaaac 263
Query: 121 ccctggaccttagttgcatttgattttattttgtgttgtataagtagtacatacaactgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccctggaccttagttgcatttgattttattttgtgttgtataagtagtacatacaactgg 203
Query: 181 agtcacatgtgtaatctcagtccttaggaggatgagcacaggaaggttgctacaagttcg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 202 agtcacatgtgtaatctcagtccttaggaggatgagcacaggagggttgctacaagttcg 143
Query: 241 ggggctacttatgctacagagtgagttaaggccaggctgagttgc 285
||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 142 ggggcaacttaagctacagagtgagttaaggccaggctgagttgc 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
